Detailed information NTG0708567

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PID12_RS05260
• Genome accession: NZ_CP116166
• Coordinates: 1076369..1077361 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain DETEC-P169
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1071369..1082361

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PID12_RS05230 (PID12_05230)	ispD	1071430..1072140 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PID12_RS05235 (PID12_05235)	ispF	1072140..1072619 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PID12_RS05240 (PID12_05240)	truD	1072616..1073665 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
PID12_RS05245 (PID12_05245)	surE	1073646..1074407 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
PID12_RS05250 (PID12_05250)	pcm	1074401..1075027 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PID12_RS05255 (PID12_05255)	nlpD	1075212..1076306 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PID12_RS05260 (PID12_05260)	rpoS	1076369..1077361 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PID12_RS05265 (PID12_05265)	ygbN	1077455..1078819 (-)	1365	WP_000104456.1	GntP family transporter	-
PID12_RS05270 (PID12_05270)	ygbM	1078908..1079684 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
PID12_RS05275 (PID12_05275)	ygbL	1079689..1080327 (-)	639	WP_001278994.1	aldolase	-
PID12_RS05280 (PID12_05280)	otnK	1080324..1081586 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=708567 PID12_RS05260 WP_000081550.1 1076369..1077361(+) (rpoS) [Escherichia coli strain DETEC-P169]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=708567 PID12_RS05260 WP_000081550.1 1076369..1077361(+) (rpoS) [Escherichia coli strain DETEC-P169]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715