Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD06_RS16480 Genome accession   NZ_CP101082
Coordinates   3344171..3344785 (-) Length   204 a.a.
NCBI ID   WP_199145704.1    Uniprot ID   -
Organism   Citrobacter braakii strain OT129     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3339171..3349785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD06_RS16465 (NMD06_16455) helD 3339395..3341449 (-) 2055 WP_370603675.1 DNA helicase IV -
  NMD06_RS16470 (NMD06_16460) - 3341575..3342021 (+) 447 WP_016152485.1 YccF domain-containing protein -
  NMD06_RS16475 (NMD06_16465) yccS 3342040..3344193 (+) 2154 WP_199145702.1 YccS family putative transporter -
  NMD06_RS16480 (NMD06_16470) sxy/tfoX 3344171..3344785 (-) 615 WP_199145704.1 TfoX/Sxy family DNA transformation protein Regulator
  NMD06_RS16485 (NMD06_16475) sulA 3345002..3345511 (+) 510 WP_114682370.1 SOS-induced cell division inhibitor SulA -
  NMD06_RS16490 (NMD06_16480) ompA 3345869..3346927 (+) 1059 WP_114682369.1 porin OmpA -
  NMD06_RS16495 (NMD06_16485) matP 3347024..3347476 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  NMD06_RS16500 (NMD06_16490) - 3347662..3349422 (+) 1761 WP_332499650.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23237.55 Da        Isoelectric Point: 8.2422

>NTDB_id=708557 NMD06_RS16480 WP_199145704.1 3344171..3344785(-) (sxy/tfoX) [Citrobacter braakii strain OT129]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVENSPVWLTFIKRGRQVVLN
YYQVNDTLWHNQQQLVSLSRFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=708557 NMD06_RS16480 WP_199145704.1 3344171..3344785(-) (sxy/tfoX) [Citrobacter braakii strain OT129]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCGCT
GTTTGGCGGTTATAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTGTATCTGCGCGCCTGTG
AACAGAGCGCCCAGTACTGTGTAGAAAATTCTCCTGTTTGGCTAACATTTATCAAACGCGGACGTCAGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCATAACCAGCAGCAGTTAGTATCGCTATCACGATTTTCACTTGATGCAGCCGT
AAAGGAAAAACAGAGTCGATTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACTTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGGGCGGTTGACGGGGTACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.657

98.529

0.676