Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD07_RS15990 Genome accession   NZ_CP101080
Coordinates   3291343..3291957 (-) Length   204 a.a.
NCBI ID   WP_085048595.1    Uniprot ID   -
Organism   Citrobacter cronae strain OT130     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3286343..3296957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD07_RS15975 (NMD07_16005) helD 3286567..3288621 (-) 2055 WP_085048593.1 DNA helicase IV -
  NMD07_RS15980 (NMD07_16010) - 3288747..3289193 (+) 447 WP_085048594.1 YccF domain-containing protein -
  NMD07_RS15985 (NMD07_16015) yccS 3289212..3291374 (+) 2163 WP_085048614.1 YccS family putative transporter -
  NMD07_RS15990 (NMD07_16020) sxy/tfoX 3291343..3291957 (-) 615 WP_085048595.1 TfoX/Sxy family DNA transformation protein Regulator
  NMD07_RS15995 (NMD07_16025) sulA 3292174..3292683 (+) 510 WP_038639432.1 SOS-induced cell division inhibitor SulA -
  NMD07_RS16000 (NMD07_16030) ompA 3293041..3294087 (+) 1047 WP_085048596.1 porin OmpA -
  NMD07_RS16005 (NMD07_16035) matP 3294186..3294638 (-) 453 WP_042314187.1 macrodomain Ter protein MatP -
  NMD07_RS16010 (NMD07_16040) - 3294824..3296584 (+) 1761 WP_085048597.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23131.64 Da        Isoelectric Point: 9.3867

>NTDB_id=708535 NMD07_RS15990 WP_085048595.1 3291343..3291957(-) (sxy/tfoX) [Citrobacter cronae strain OT130]
MKELSYAKIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVASGELYLRACEQSVQYCAKNSPVWLTFIKRGRPVVLN
YYQVNDALWQNHQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRTLGAQMCWLKLRQNN
PALTVKILYALEGAVGGVHEAALPAVRRQELVEWVSSLTPKPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=708535 NMD07_RS15990 WP_085048595.1 3291343..3291957(-) (sxy/tfoX) [Citrobacter cronae strain OT130]
ATGAAAGAACTTTCTTATGCAAAGATCTATAAATCACAAGAATATCTGGCGTCTCTGGGAACAATTCACTATCGCTCATT
ATTTGGCAGCTACAGTTTGACGGTTGGGGATACGGTCTTTGCTATGGTCGCCAGCGGTGAGTTATATCTTCGGGCCTGCG
AACAGAGCGTACAGTACTGTGCAAAAAATTCGCCTGTCTGGCTGACATTTATAAAGCGCGGGCGTCCGGTGGTACTCAAC
TACTATCAGGTAAATGATGCGCTGTGGCAAAACCATCAGCAATTGGTGTCGTTATCGCGGTACTCATTGGATGCTGCTGT
TAAGGAAAAACAGAGTCGCTTTGCTCAACATCGTCTGCGGGAACTACCAAATATGACGTTTCATCTGGAGACCCTGCTAA
ATGAAGCAGGAATTAAAGATGAGGGAACATTGCGAACGTTGGGCGCCCAAATGTGCTGGCTGAAACTGCGGCAAAATAAT
CCAGCCCTGACGGTAAAAATACTTTATGCCCTTGAAGGCGCGGTCGGTGGCGTGCATGAAGCAGCGCTCCCGGCGGTCCG
TCGCCAGGAGCTGGTGGAGTGGGTCAGTTCACTGACGCCGAAGCCAGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.137

100

0.681