Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PIC26_RS16855 Genome accession   NZ_CP116159
Coordinates   3482391..3482996 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain DETEC-P351     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3477391..3487996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC26_RS16835 (PIC26_16830) aes 3477428..3478387 (+) 960 WP_000801813.1 acetyl esterase -
  PIC26_RS16840 (PIC26_16835) hemH 3478384..3479346 (-) 963 WP_001250103.1 ferrochelatase -
  PIC26_RS16845 (PIC26_16840) adk 3479582..3480226 (-) 645 WP_001220233.1 adenylate kinase -
  PIC26_RS16850 (PIC26_16845) htpG 3480407..3482281 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  PIC26_RS16855 (PIC26_16850) recR 3482391..3482996 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PIC26_RS16860 (PIC26_16855) ybaB 3482996..3483325 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PIC26_RS16865 (PIC26_16860) dnaX 3483378..3485309 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  PIC26_RS16870 (PIC26_16865) apt 3485438..3485989 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PIC26_RS16875 (PIC26_16870) ybaN 3486142..3486519 (-) 378 WP_001188905.1 DUF454 family protein -
  PIC26_RS16880 (PIC26_16875) priC 3486589..3487116 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  PIC26_RS16885 (PIC26_16880) rsmS 3487130..3487291 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=708519 PIC26_RS16855 WP_001195025.1 3482391..3482996(-) (recR) [Escherichia coli strain DETEC-P351]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=708519 PIC26_RS16855 WP_001195025.1 3482391..3482996(-) (recR) [Escherichia coli strain DETEC-P351]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443