Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD10_RS16080 Genome accession   NZ_CP101069
Coordinates   3271115..3271729 (-) Length   204 a.a.
NCBI ID   WP_003831996.1    Uniprot ID   A0A5A9E513
Organism   Citrobacter portucalensis strain OT151     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3266115..3276729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD10_RS16065 (NMD10_16035) helD 3266339..3268393 (-) 2055 WP_206159965.1 DNA helicase IV -
  NMD10_RS16070 (NMD10_16040) - 3268519..3268965 (+) 447 WP_003831998.1 YccF domain-containing protein -
  NMD10_RS16075 (NMD10_16045) yccS 3268984..3271137 (+) 2154 WP_003831997.1 YccS family putative transporter -
  NMD10_RS16080 (NMD10_16050) sxy/tfoX 3271115..3271729 (-) 615 WP_003831996.1 TfoX/Sxy family DNA transformation protein Regulator
  NMD10_RS16085 (NMD10_16055) sulA 3271947..3272456 (+) 510 WP_206159964.1 SOS-induced cell division inhibitor SulA -
  NMD10_RS16090 (NMD10_16060) ompA 3272814..3273860 (+) 1047 WP_063940603.1 porin OmpA -
  NMD10_RS16095 (NMD10_16065) matP 3273949..3274401 (-) 453 WP_003831992.1 macrodomain Ter protein MatP -
  NMD10_RS16100 (NMD10_16070) - 3274587..3276347 (+) 1761 WP_206159963.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.54 Da        Isoelectric Point: 8.6049

>NTDB_id=708490 NMD10_RS16080 WP_003831996.1 3271115..3271729(-) (sxy/tfoX) [Citrobacter portucalensis strain OT151]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=708490 NMD10_RS16080 WP_003831996.1 3271115..3271729(-) (sxy/tfoX) [Citrobacter portucalensis strain OT151]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGCTGGTGTCGTTATCGCGATATTCGTTGGATGCTGCGGT
TAAGGAGAAACAAAGTCGCTTTGCCCAGCATCGTCTGCGAGAATTGCCGAATATGACGTTTCATCTGGAGACCCTGCTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCACTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9E513

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676