Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   H7678_RS06410 Genome accession   NZ_AP023393
Coordinates   1277723..1279933 (-) Length   736 a.a.
NCBI ID   WP_184010216.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 89     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1272723..1284933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7678_RS06385 (SDSE89_12410) - 1273408..1274094 (-) 687 WP_012767134.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  H7678_RS06390 (SDSE89_12420) nth 1274175..1274831 (-) 657 WP_003054655.1 endonuclease III -
  H7678_RS06395 (SDSE89_12430) - 1274828..1275511 (-) 684 WP_014612364.1 DnaD domain-containing protein -
  H7678_RS06400 (SDSE89_12440) - 1275729..1276247 (-) 519 WP_184010213.1 adenine phosphoribosyltransferase -
  H7678_RS06405 (SDSE89_12450) - 1276430..1277563 (-) 1134 WP_022554244.1 ISAs1-like element IS1548 family transposase -
  H7678_RS06410 (SDSE89_12460) recJ 1277723..1279933 (-) 2211 WP_184010216.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  H7678_RS06415 (SDSE89_12470) - 1279930..1280694 (-) 765 WP_012767137.1 SDR family oxidoreductase -
  H7678_RS06420 (SDSE89_12480) rnz 1280694..1281623 (-) 930 WP_003054662.1 ribonuclease Z -
  H7678_RS06425 (SDSE89_12490) - 1281638..1282273 (-) 636 WP_014612367.1 cystathionine beta-lyase -
  H7678_RS06430 (SDSE89_12500) hflX 1282266..1283504 (-) 1239 WP_065355349.1 GTPase HflX -
  H7678_RS06435 (SDSE89_12510) miaA 1283592..1284476 (-) 885 WP_003057843.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  H7678_RS06440 (SDSE89_12520) - 1284609..1284785 (+) 177 WP_003057835.1 DUF3042 family protein -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 82149.80 Da        Isoelectric Point: 4.5940

>NTDB_id=70849 H7678_RS06410 WP_184010216.1 1277723..1279933(-) (recJ) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
MIKSKYSWKIEDKKPDDGFFKLAKAKGLSQTAAQLIYERGIRTEEALDEFLTADLSQLHDPYLLHDMEKAVLRIRQAIED
GEQILVYGDYDADGMTSASIVKEALDMMGAEPLVYLPNRFTDGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEALSYAQ
TQGIDVIVTDHHSLPEELPEAFAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLPTDCLDLVAIGTIADMVSLTGENR
VLVKNGLTMLKHTERVGLQELMSLSSIDLDQFTEDAVGFQIAPQLNALGRLDDPNPAIELLTGFDDQEAQAIALMIKEKN
EERKALVQDIFDQAMAMVDPQKPVQVLAQAGWHPGVLGIVAGRIMEAIGQTVIVLAIDNGFAKGSARSLEAINIFEALSG
NRDLFTAFGGHAGAAGMTLPVDNLEALSDLLCQFVIERGLDQTAKNTLTIDERLSLEDLSLDTLKSLDKLAPYGMDHPKP
IFYVKDIKVSQARAMGQDQSHLKFKVSQGKASFDVLAFGQGSQLQEFRQATGLELAVTLSVNHWNGNTSLQFMLVDARVD
GVQLLDLRTKTAKVPEGIPTIEEDPNARVILINDIPEDFKTWRNQFVHKDFDAIYFKNQMKHPYYLTGFGSREQFAKLYK
TIYQFPEFDLRHKLTELSHYLNIEKLLLIKLIQIFEELSFVTIDDGLMTVNPQAQKREISESHIYQDLKELVKFQEIMAL
ASPKEMYDYLVKSNDQ

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=70849 H7678_RS06410 WP_184010216.1 1277723..1279933(-) (recJ) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
ATGATTAAATCCAAATATAGTTGGAAAATAGAAGACAAGAAGCCAGATGATGGCTTCTTTAAGCTAGCAAAAGCAAAAGG
CCTGTCCCAGACCGCCGCTCAGTTGATTTACGAGCGAGGGATAAGGACTGAAGAAGCCTTAGATGAGTTTTTAACAGCGG
ACTTGTCTCAACTGCATGACCCTTATTTGCTACATGATATGGAAAAAGCTGTGCTAAGGATTCGTCAAGCCATTGAAGAT
GGTGAGCAGATTTTGGTTTACGGAGACTATGATGCTGATGGCATGACGTCGGCATCCATTGTCAAAGAAGCCTTAGACAT
GATGGGAGCAGAGCCTTTGGTTTATCTTCCCAACCGCTTTACAGATGGCTACGGCCCCAACCAAAGTGTTTATAAGTACT
TTATTGAGCAGGAGGCTGTCTCCTTAATTATAACAGTGGATAATGGAGTAGCTGGGCACGAAGCGCTTAGCTATGCCCAG
ACACAGGGAATTGATGTCATTGTAACTGACCATCATAGCCTGCCCGAAGAATTGCCAGAGGCCTTTGCCATCATTCACCC
TGAGCATCCCGATGCTGACTATCCTTTTAAACACTTAGCTGGCTGTGGCGTTGCCTTTAAATTGGCAACTGCTTTGCTAG
AAAGTTTGCCAACAGACTGTCTAGATTTGGTAGCTATTGGAACCATTGCTGATATGGTAAGCTTGACAGGTGAAAACCGT
GTCTTGGTCAAAAATGGCTTGACCATGCTAAAACACACTGAAAGAGTGGGGTTGCAGGAACTGATGTCCTTGTCTTCTAT
TGATTTGGACCAATTTACGGAAGATGCTGTTGGGTTTCAGATTGCTCCCCAGTTGAATGCCTTAGGTCGTTTAGATGATC
CTAATCCAGCTATTGAGCTACTGACGGGCTTTGATGATCAAGAAGCCCAAGCGATTGCCTTGATGATTAAGGAAAAAAAT
GAAGAGCGTAAGGCTTTGGTCCAAGACATTTTTGATCAAGCGATGGCTATGGTTGATCCTCAAAAACCAGTTCAAGTCTT
AGCTCAAGCTGGTTGGCATCCAGGTGTGCTAGGTATTGTAGCGGGTCGCATTATGGAAGCCATTGGACAGACGGTCATTG
TCTTAGCTATTGATAACGGTTTTGCGAAAGGCTCGGCCAGAAGTTTAGAGGCCATTAATATATTTGAAGCCTTAAGTGGG
AATCGTGATCTTTTTACAGCTTTCGGTGGACATGCTGGTGCAGCTGGGATGACTTTGCCCGTGGATAATTTAGAAGCTTT
ATCGGACTTGCTTTGTCAGTTTGTGATAGAACGTGGCTTAGATCAGACTGCTAAAAATACGTTAACTATTGATGAAAGGC
TGTCTTTGGAGGATCTTAGTCTTGATACTTTAAAGAGTTTGGACAAACTAGCCCCCTATGGGATGGATCATCCTAAGCCA
ATCTTTTATGTTAAGGATATTAAAGTTAGTCAAGCGCGTGCCATGGGTCAAGACCAGAGTCATCTTAAATTCAAAGTCAG
TCAGGGCAAAGCTTCCTTTGACGTACTGGCTTTTGGTCAAGGAAGTCAACTGCAAGAGTTCCGACAAGCTACTGGTTTAG
AATTAGCAGTTACCTTATCTGTCAACCATTGGAATGGGAACACGAGTCTCCAATTCATGTTAGTAGATGCTCGTGTTGAC
GGAGTGCAACTTCTTGACTTAAGGACAAAAACAGCCAAAGTTCCTGAAGGTATTCCGACTATTGAAGAAGACCCAAATGC
CAGAGTCATTCTGATTAATGACATCCCTGAAGATTTCAAAACCTGGCGCAACCAGTTTGTTCACAAGGATTTTGACGCCA
TCTATTTTAAAAATCAGATGAAACATCCTTATTATTTAACAGGATTTGGCAGCAGAGAGCAGTTTGCCAAGCTCTACAAA
ACCATCTATCAGTTTCCTGAATTTGATTTACGACATAAATTGACAGAGTTGAGTCACTATTTAAACATAGAAAAACTTTT
ACTGATTAAGTTGATTCAAATTTTTGAAGAGTTGTCTTTTGTGACGATTGACGATGGGCTGATGACGGTTAACCCCCAAG
CGCAAAAACGAGAGATTTCAGAGAGCCACATTTACCAAGACTTAAAAGAATTGGTGAAATTTCAAGAAATCATGGCTTTG
GCTAGCCCGAAAGAGATGTATGATTATTTGGTGAAATCAAACGATCAATAA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-435)

RecJ OB domain (RecJ_OB)

(450-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-729)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

63.821

100

0.64
  recJ Bacillus subtilis subsp. subtilis str. 168

35.121

100

0.374