Detailed information NTG0708486

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PIC26_RS05460
• Genome accession: NZ_CP116159
• Coordinates: 1117362..1118354 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain DETEC-P351
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1112362..1123354

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PIC26_RS05430 (PIC26_05430)	ispD	1112423..1113133 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PIC26_RS05435 (PIC26_05435)	ispF	1113133..1113612 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PIC26_RS05440 (PIC26_05440)	truD	1113609..1114658 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
PIC26_RS05445 (PIC26_05445)	surE	1114639..1115400 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PIC26_RS05450 (PIC26_05450)	pcm	1115394..1116020 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PIC26_RS05455 (PIC26_05455)	nlpD	1116205..1117299 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PIC26_RS05460 (PIC26_05460)	rpoS	1117362..1118354 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PIC26_RS05465 (PIC26_05465)	ygbN	1118448..1119812 (-)	1365	WP_000104441.1	GntP family transporter	-
PIC26_RS05470 (PIC26_05470)	ygbM	1119901..1120677 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
PIC26_RS05475 (PIC26_05475)	ygbL	1120682..1121320 (-)	639	WP_001278994.1	aldolase	-
PIC26_RS05480 (PIC26_05480)	otnK	1121317..1122579 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=708486 PIC26_RS05460 WP_000081550.1 1117362..1118354(+) (rpoS) [Escherichia coli strain DETEC-P351]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=708486 PIC26_RS05460 WP_000081550.1 1117362..1118354(+) (rpoS) [Escherichia coli strain DETEC-P351]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715