Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   K6J56_RS00260 Genome accession   NZ_AP018768
Coordinates   55815..56498 (-) Length   227 a.a.
NCBI ID   WP_011272301.1    Uniprot ID   Q4QLW8
Organism   Haemophilus influenzae strain CHBN-II-5 isolate 13H40     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50815..61498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J56_RS00245 (CHBNII5_00500) nrdR 51620..52069 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  K6J56_RS00250 (CHBNII5_00510) recC 52124..55489 (-) 3366 WP_044364474.1 exodeoxyribonuclease V subunit gamma -
  K6J56_RS00255 (CHBNII5_00520) comQ 55535..55822 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  K6J56_RS00260 (CHBNII5_00530) comP 55815..56498 (-) 684 WP_011272301.1 DUF2572 family protein Machinery gene
  K6J56_RS00265 (CHBNII5_00540) comO 56495..57214 (-) 720 WP_011272300.1 type II secretion system protein J Machinery gene
  K6J56_RS00270 (CHBNII5_00550) comN 57214..57726 (-) 513 WP_011272299.1 type II secretion system protein Machinery gene
  K6J56_RS00275 (CHBNII5_00560) suhB 57926..58738 (+) 813 WP_011272298.1 inositol-1-monophosphatase -
  K6J56_RS00280 (CHBNII5_00570) nrfE 58847..60754 (+) 1908 WP_011272297.1 heme lyase NrfEFG subunit NrfE -
  K6J56_RS00285 (CHBNII5_00580) - 60754..61284 (+) 531 WP_005688388.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25371.21 Da        Isoelectric Point: 9.5157

>NTDB_id=70846 K6J56_RS00260 WP_011272301.1 55815..56498(-) (comP) [Haemophilus influenzae strain CHBN-II-5 isolate 13H40]
MTIQKGIITLTILIFISGLLSVILLLDDSNLSFFRAQQNQRKLYVERTLQLQRITALKKQTACLDLSLNNDESVKQISIT
LDGATDSIQYFLWCERMSLFKKSPKKGDNQGALKDFVSGEKLAYFRPHFSSPPRILNANKTPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITNGNLTLDGVTLAYGKKTVVALVQQYSQWKLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=70846 K6J56_RS00260 WP_011272301.1 55815..56498(-) (comP) [Haemophilus influenzae strain CHBN-II-5 isolate 13H40]
ATGACAATACAAAAAGGTATTATTACGCTGACTATTCTGATTTTTATTTCAGGCTTATTAAGCGTAATCTTATTGTTAGA
TGATAGCAATTTAAGTTTTTTTCGGGCGCAACAAAATCAACGAAAACTGTATGTGGAAAGAACATTACAATTACAAAGAA
TAACAGCCTTGAAAAAACAAACTGCCTGCCTTGATTTATCATTAAATAATGATGAAAGTGTAAAGCAAATCAGCATTACG
CTTGATGGTGCCACAGATTCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGCGCATTGAAAGATTTTGTGAGTGGCGAAAAACTTGCCTATTTTCGACCGCACTTTTCTTCTCCGCCCA
GAATTTTAAACGCGAATAAAACGCCTAAACTTTATTGGTTTTCAGATTCACAAGCAGAGGTTGAAATTAATGGCACGGTG
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGCGCAGTGATTACCAACGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTCGCTTTAGTGCAACAATATAGTCAGTGGAAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QLW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

91.63

100

0.916

Multiple sequence alignment