Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   K6J56_RS00255 Genome accession   NZ_AP018768
Coordinates   55535..55822 (-) Length   95 a.a.
NCBI ID   WP_021034778.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-5 isolate 13H40     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50535..60822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J56_RS00245 (CHBNII5_00500) nrdR 51620..52069 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  K6J56_RS00250 (CHBNII5_00510) recC 52124..55489 (-) 3366 WP_044364474.1 exodeoxyribonuclease V subunit gamma -
  K6J56_RS00255 (CHBNII5_00520) comQ 55535..55822 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  K6J56_RS00260 (CHBNII5_00530) comP 55815..56498 (-) 684 WP_011272301.1 DUF2572 family protein Machinery gene
  K6J56_RS00265 (CHBNII5_00540) comO 56495..57214 (-) 720 WP_011272300.1 type II secretion system protein J Machinery gene
  K6J56_RS00270 (CHBNII5_00550) comN 57214..57726 (-) 513 WP_011272299.1 type II secretion system protein Machinery gene
  K6J56_RS00275 (CHBNII5_00560) suhB 57926..58738 (+) 813 WP_011272298.1 inositol-1-monophosphatase -
  K6J56_RS00280 (CHBNII5_00570) nrfE 58847..60754 (+) 1908 WP_011272297.1 heme lyase NrfEFG subunit NrfE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11057.89 Da        Isoelectric Point: 9.2201

>NTDB_id=70845 K6J56_RS00255 WP_021034778.1 55535..55822(-) (comQ) [Haemophilus influenzae strain CHBN-II-5 isolate 13H40]
MNKGMSLITLLFSLALFSVLFLVFNQWTAEQRKSAVKIYQDFQATQIAENQAQRQFLGLACEQLIQQNGLTFRIRCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=70845 K6J56_RS00255 WP_021034778.1 55535..55822(-) (comQ) [Haemophilus influenzae strain CHBN-II-5 isolate 13H40]
ATGAATAAAGGAATGTCTCTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAGAACAGCGAAAAAGTGCGGTAAAAATTTATCAAGATTTTCAGGCAACACAAATTGCAGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCGATGTGAAAATGAACGC
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

92.632

100

0.926

Multiple sequence alignment