Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD12_RS16030 Genome accession   NZ_CP101062
Coordinates   3242292..3242906 (-) Length   204 a.a.
NCBI ID   WP_003831996.1    Uniprot ID   A0A5A9E513
Organism   Citrobacter portucalensis strain OT163     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3237292..3247906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD12_RS16015 (NMD12_15985) helD 3237516..3239570 (-) 2055 WP_370608799.1 DNA helicase IV -
  NMD12_RS16020 (NMD12_15990) - 3239696..3240142 (+) 447 WP_003831998.1 YccF domain-containing protein -
  NMD12_RS16025 (NMD12_15995) yccS 3240161..3242314 (+) 2154 WP_048236463.1 YccS family putative transporter -
  NMD12_RS16030 (NMD12_16000) sxy/tfoX 3242292..3242906 (-) 615 WP_003831996.1 TfoX/Sxy family DNA transformation protein Regulator
  NMD12_RS16035 (NMD12_16005) sulA 3243124..3243633 (+) 510 WP_008784287.1 SOS-induced cell division inhibitor SulA -
  NMD12_RS16040 (NMD12_16010) ompA 3243991..3245049 (+) 1059 WP_137377301.1 porin OmpA -
  NMD12_RS16045 (NMD12_16015) matP 3245138..3245590 (-) 453 WP_032942905.1 macrodomain Ter protein MatP -
  NMD12_RS16050 (NMD12_16020) - 3245776..3247536 (+) 1761 WP_137377300.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.54 Da        Isoelectric Point: 8.6049

>NTDB_id=708444 NMD12_RS16030 WP_003831996.1 3242292..3242906(-) (sxy/tfoX) [Citrobacter portucalensis strain OT163]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=708444 NMD12_RS16030 WP_003831996.1 3242292..3242906(-) (sxy/tfoX) [Citrobacter portucalensis strain OT163]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGAGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGCTGGTGTCGCTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGTTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGGGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAT
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAGCCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9E513

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676