Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD21_RS16205 Genome accession   NZ_CP101060
Coordinates   3318111..3318725 (-) Length   204 a.a.
NCBI ID   WP_079938029.1    Uniprot ID   A0AAX0LYH3
Organism   Citrobacter portucalensis strain OT205     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3313111..3323725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD21_RS16190 (NMD21_16150) helD 3313335..3315389 (-) 2055 WP_286635666.1 DNA helicase IV -
  NMD21_RS16195 (NMD21_16155) - 3315515..3315961 (+) 447 WP_005123514.1 YccF domain-containing protein -
  NMD21_RS16200 (NMD21_16160) yccS 3315980..3318133 (+) 2154 WP_286635667.1 YccS family putative transporter -
  NMD21_RS16205 (NMD21_16165) sxy/tfoX 3318111..3318725 (-) 615 WP_079938029.1 TfoX/Sxy family DNA transformation protein Regulator
  NMD21_RS16210 (NMD21_16170) sulA 3318943..3319452 (+) 510 WP_008784287.1 SOS-induced cell division inhibitor SulA -
  NMD21_RS16215 (NMD21_16175) ompA 3319810..3320868 (+) 1059 WP_079938031.1 porin OmpA -
  NMD21_RS16220 (NMD21_16180) matP 3320957..3321409 (-) 453 WP_079938032.1 macrodomain Ter protein MatP -
  NMD21_RS16225 (NMD21_16185) - 3321595..3323355 (+) 1761 WP_071444984.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23167.60 Da        Isoelectric Point: 9.1901

>NTDB_id=708421 NMD21_RS16205 WP_079938029.1 3318111..3318725(-) (sxy/tfoX) [Citrobacter portucalensis strain OT205]
MKKLSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=708421 NMD21_RS16205 WP_079938029.1 3318111..3318725(-) (sxy/tfoX) [Citrobacter portucalensis strain OT205]
ATGAAAAAACTTTCTTATGCAAGGATCTATAAATCGCAGGAATACCTTGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGCGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGCGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTTCTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGCTGGTGTCGTTATCGCGATATTCATTGGATGCAGCAGT
TAAGGAAAAACAGAGCCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGCTGGAATTAAAGATGAGGGGACTATGCGGTCGTTAGGGGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676