Detailed information NTG0708403

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PIC71_RS04890
• Genome accession: NZ_CP116152
• Coordinates: 982970..983962 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain DETEC-P61
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 977970..988962

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PIC71_RS04860 (PIC71_04860)	ispD	978031..978741 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PIC71_RS04865 (PIC71_04865)	ispF	978741..979220 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PIC71_RS04870 (PIC71_04870)	truD	979217..980266 (+)	1050	WP_063120648.1	tRNA pseudouridine(13) synthase TruD	-
PIC71_RS04875 (PIC71_04875)	surE	980247..981008 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PIC71_RS04880 (PIC71_04880)	pcm	981002..981628 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PIC71_RS04885 (PIC71_04885)	nlpD	981813..982907 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
PIC71_RS04890 (PIC71_04890)	rpoS	982970..983962 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PIC71_RS04895 (PIC71_04895)	ygbN	984056..985420 (-)	1365	WP_000104441.1	GntP family transporter	-
PIC71_RS04900 (PIC71_04900)	ygbM	985509..986285 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
PIC71_RS04905 (PIC71_04905)	ygbL	986290..986928 (-)	639	WP_001278994.1	aldolase	-
PIC71_RS04910 (PIC71_04910)	otnK	986925..988187 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=708403 PIC71_RS04890 WP_000081550.1 982970..983962(+) (rpoS) [Escherichia coli strain DETEC-P61]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=708403 PIC71_RS04890 WP_000081550.1 982970..983962(+) (rpoS) [Escherichia coli strain DETEC-P61]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715