Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD02_RS16005 Genome accession   NZ_CP101051
Coordinates   3258477..3259091 (-) Length   204 a.a.
NCBI ID   WP_151217951.1    Uniprot ID   -
Organism   Citrobacter meridianamericanus strain OT98     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3253477..3264091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD02_RS15990 (NMD02_15985) helD 3253701..3255755 (-) 2055 WP_252838070.1 DNA helicase IV -
  NMD02_RS15995 (NMD02_15990) - 3255881..3256327 (+) 447 WP_016152485.1 YccF domain-containing protein -
  NMD02_RS16000 (NMD02_15995) yccS 3256346..3258499 (+) 2154 WP_151217952.1 YccS family putative transporter -
  NMD02_RS16005 (NMD02_16000) sxy/tfoX 3258477..3259091 (-) 615 WP_151217951.1 TfoX/Sxy family DNA transformation protein Regulator
  NMD02_RS16010 (NMD02_16005) sulA 3259308..3259817 (+) 510 WP_151217950.1 SOS-induced cell division inhibitor SulA -
  NMD02_RS16015 (NMD02_16010) ompA 3260175..3261233 (+) 1059 WP_151217949.1 porin OmpA -
  NMD02_RS16020 (NMD02_16015) matP 3261331..3261783 (-) 453 WP_151217948.1 macrodomain Ter protein MatP -
  NMD02_RS16025 (NMD02_16020) - 3261969..3263729 (+) 1761 WP_151217947.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23151.73 Da        Isoelectric Point: 9.5609

>NTDB_id=708380 NMD02_RS16005 WP_151217951.1 3258477..3259091(-) (sxy/tfoX) [Citrobacter meridianamericanus strain OT98]
MKELSYARIYKSQEYLASLGAIHYRSLFGSYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDALWQNQPQLVMLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALPVKILYALEGAVGGVHEAALPATRRRELVEWVSSLTSKLGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=708380 NMD02_RS16005 WP_151217951.1 3258477..3259091(-) (sxy/tfoX) [Citrobacter meridianamericanus strain OT98]
ATGAAAGAACTTTCTTATGCAAGGATCTATAAATCTCAAGAATATCTGGCTTCTTTGGGGGCGATTCACTATCGCTCATT
GTTTGGCAGCTACAGTCTGACTGTTGGGGATACGGTCTTTGCCATGGTTGCCAGCGGTGAACTATATCTTCGGGCATGTG
AGCAGAGCGCTCAGTACTGTGTAAAAAACTCTCCTGTCTGGCTGACATTTATCAAGCGCGGACGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCCGCAGTTGGTGATGCTATCACGCTATTCGCTGGATGCAGCTGT
TAAGGAAAAACAGAGCCGCTTTGCACAACATCGTCTGCGGGAGCTACCCAATATGACGTTTCATCTGGAGACTCTGCTAA
ATGAAGCAGGAATTAAAGATGAGGGGACATTGCGTTCGCTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCCGCCTTGCCGGTAAAAATACTCTACGCCCTTGAAGGAGCTGTCGGGGGAGTGCATGAAGCTGCGCTCCCGGCGACGCG
TCGCCGGGAGCTGGTAGAGTGGGTGAGTTCTCTTACGTCGAAACTGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681