Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PIB88_RS19465 Genome accession   NZ_CP116145
Coordinates   4040448..4041053 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain DETEC-P622     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4035448..4046053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB88_RS19435 (PIB88_19435) rsmS 4036150..4036314 (-) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -
  PIB88_RS19440 (PIB88_19440) priC 4036328..4036855 (-) 528 WP_000844862.1 primosomal replication protein N'' -
  PIB88_RS19445 (PIB88_19445) ybaN 4036925..4037302 (+) 378 WP_001188900.1 DUF454 family protein -
  PIB88_RS19450 (PIB88_19450) apt 4037455..4038006 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PIB88_RS19455 (PIB88_19455) dnaX 4038135..4040066 (+) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  PIB88_RS19460 (PIB88_19460) ybaB 4040119..4040448 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PIB88_RS19465 (PIB88_19465) recR 4040448..4041053 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PIB88_RS19470 (PIB88_19470) htpG 4041163..4043037 (+) 1875 WP_000678189.1 molecular chaperone HtpG -
  PIB88_RS19475 (PIB88_19475) adk 4043218..4043862 (+) 645 WP_001220233.1 adenylate kinase -
  PIB88_RS19480 (PIB88_19480) hemH 4043994..4044956 (+) 963 WP_001250114.1 ferrochelatase -
  PIB88_RS19485 (PIB88_19485) aes 4044953..4045912 (-) 960 WP_000801794.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=708374 PIB88_RS19465 WP_001195025.1 4040448..4041053(+) (recR) [Escherichia coli strain DETEC-P622]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=708374 PIB88_RS19465 WP_001195025.1 4040448..4041053(+) (recR) [Escherichia coli strain DETEC-P622]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443