Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD03_RS16055 Genome accession   NZ_CP101044
Coordinates   3228942..3229556 (-) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter braakii strain OT113     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3223942..3234556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD03_RS16040 (NMD03_15990) helD 3224166..3226220 (-) 2055 WP_019076416.1 DNA helicase IV -
  NMD03_RS16045 (NMD03_15995) - 3226346..3226792 (+) 447 WP_016152485.1 YccF domain-containing protein -
  NMD03_RS16050 (NMD03_16000) yccS 3226811..3228964 (+) 2154 WP_016152484.1 YccS family putative transporter -
  NMD03_RS16055 (NMD03_16005) sxy/tfoX 3228942..3229556 (-) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  NMD03_RS16060 (NMD03_16010) sulA 3229773..3230282 (+) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  NMD03_RS16065 (NMD03_16015) ompA 3230640..3231698 (+) 1059 WP_016152481.1 porin OmpA -
  NMD03_RS16070 (NMD03_16020) matP 3231797..3232249 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  NMD03_RS16075 (NMD03_16025) - 3232435..3234195 (+) 1761 WP_101699891.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=708357 NMD03_RS16055 WP_016152483.1 3228942..3229556(-) (sxy/tfoX) [Citrobacter braakii strain OT113]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=708357 NMD03_RS16055 WP_016152483.1 3228942..3229556(-) (sxy/tfoX) [Citrobacter braakii strain OT113]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTATCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681