Detailed information NTG0708355

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: PIB88_RS14085
• Genome accession: NZ_CP116145
• Coordinates: 2903339..2904364 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain DETEC-P622
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2898339..2909364

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PIB88_RS14055 (PIB88_14055)	zapB	2898423..2898668 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
PIB88_RS14060 (PIB88_14060)	rraA	2898753..2899238 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
PIB88_RS14065 (PIB88_14065)	menA	2899331..2900257 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
PIB88_RS14070 (PIB88_14070)	hslU	2900324..2901655 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
PIB88_RS14075 (PIB88_14075)	hslV	2901665..2902195 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
PIB88_RS14080 (PIB88_14080)	ftsN	2902288..2903247 (-)	960	WP_000068834.1	cell division protein FtsN	-
PIB88_RS14085 (PIB88_14085)	cytR	2903339..2904364 (-)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
PIB88_RS14090 (PIB88_14090)	priA	2904520..2906718 (-)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
PIB88_RS14095 (PIB88_14095)	rpmE	2906921..2907133 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
PIB88_RS14100 (PIB88_14100)	yiiX	2907194..2907802 (-)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
PIB88_RS14105 (PIB88_14105)	metJ	2907862..2908179 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=708355 PIB88_RS14085 WP_000644908.1 2903339..2904364(-) (cytR) [Escherichia coli strain DETEC-P622]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=708355 PIB88_RS14085 WP_000644908.1 2903339..2904364(-) (cytR) [Escherichia coli strain DETEC-P622]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625