Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   PIB88_RS08875 Genome accession   NZ_CP116145
Coordinates   1835674..1836843 (+) Length   389 a.a.
NCBI ID   WP_001161856.1    Uniprot ID   -
Organism   Escherichia coli strain DETEC-P622     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1830674..1841843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB88_RS08860 (PIB88_08860) - 1831189..1832865 (+) 1677 WP_001305083.1 polysaccharide biosynthesis/export family protein -
  PIB88_RS08865 (PIB88_08865) kdsB 1832875..1833615 (+) 741 WP_000030749.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PIB88_RS08870 (PIB88_08870) - 1833612..1835639 (+) 2028 WP_000579513.1 capsular polysaccharide biosynthesis protein -
  PIB88_RS08875 (PIB88_08875) kpsS 1835674..1836843 (+) 1170 WP_001161856.1 capsule biosynthesis protein Regulator
  PIB88_RS08880 (PIB88_08880) kfiD 1837182..1838360 (-) 1179 WP_001305084.1 K5 polysaccharide biosynthesis UDP-glucose dehydrogenase KfiD -
  PIB88_RS08885 (PIB88_08885) kfiC 1838402..1839964 (-) 1563 WP_001305085.1 K5 polysaccharide biosynthesis glycosyltransferase KfiC -
  PIB88_RS08890 (PIB88_08890) - 1840125..1841159 (+) 1035 Protein_1746 IS481 family transposase -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 46397.64 Da        Isoelectric Point: 10.0934

>NTDB_id=708325 PIB88_RS08875 WP_001161856.1 1835674..1836843(+) (kpsS) [Escherichia coli strain DETEC-P622]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSSYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERILYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYY

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=708325 PIB88_RS08875 WP_001161856.1 1835674..1836843(+) (kpsS) [Escherichia coli strain DETEC-P622]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTCAG
TGATGTTGCCGAGTGGCTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTAGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGACACAATCCTCTGCTTTGGCGACTGCCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTCCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGCCATGCTATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTTCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAACTGGACCAGCGTTATTATCTTGCTGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAGTTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAACGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGAATCCTTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCTGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGCGGTTTATTATTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

100

0.398