Detailed information NTG0708320

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PIB88_RS07180
• Genome accession: NZ_CP116145
• Coordinates: 1474135..1475127 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain DETEC-P622
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1469135..1480127

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PIB88_RS07160 (PIB88_07160)	ygbM	1469773..1470549 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
PIB88_RS07165 (PIB88_07165)	ygbN	1470638..1472002 (+)	1365	WP_000104433.1	GntP family transporter	-
PIB88_RS07170 (PIB88_07170)	-	1472145..1473188 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
PIB88_RS07175 (PIB88_07175)	-	1473413..1473964 (+)	552	WP_001179444.1	flavodoxin family protein	-
PIB88_RS07180 (PIB88_07180)	rpoS	1474135..1475127 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PIB88_RS07185 (PIB88_07185)	nlpD	1475190..1476284 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
PIB88_RS07190 (PIB88_07190)	pcm	1476469..1477095 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PIB88_RS07195 (PIB88_07195)	surE	1477089..1477850 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PIB88_RS07200 (PIB88_07200)	truD	1477831..1478880 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
PIB88_RS07205 (PIB88_07205)	ispF	1478877..1479356 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PIB88_RS07210 (PIB88_07210)	ispD	1479356..1480066 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=708320 PIB88_RS07180 WP_000081550.1 1474135..1475127(-) (rpoS) [Escherichia coli strain DETEC-P622]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=708320 PIB88_RS07180 WP_000081550.1 1474135..1475127(-) (rpoS) [Escherichia coli strain DETEC-P622]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715