Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD08_RS16840 Genome accession   NZ_CP101036
Coordinates   3408809..3409423 (-) Length   204 a.a.
NCBI ID   WP_151225160.1    Uniprot ID   -
Organism   Citrobacter meridianamericanus strain OT146     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3403809..3414423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD08_RS16825 (NMD08_16770) helD 3404033..3406087 (-) 2055 WP_210904905.1 DNA helicase IV -
  NMD08_RS16830 (NMD08_16775) - 3406213..3406659 (+) 447 WP_016152485.1 YccF domain-containing protein -
  NMD08_RS16835 (NMD08_16780) yccS 3406678..3408831 (+) 2154 WP_151217952.1 YccS family putative transporter -
  NMD08_RS16840 (NMD08_16785) sxy/tfoX 3408809..3409423 (-) 615 WP_151225160.1 TfoX/Sxy family DNA transformation protein Regulator
  NMD08_RS16845 (NMD08_16790) sulA 3409640..3410149 (+) 510 WP_151217950.1 SOS-induced cell division inhibitor SulA -
  NMD08_RS16850 (NMD08_16795) ompA 3410507..3411565 (+) 1059 WP_151217949.1 porin OmpA -
  NMD08_RS16855 (NMD08_16800) matP 3411663..3412115 (-) 453 WP_151217948.1 macrodomain Ter protein MatP -
  NMD08_RS16860 (NMD08_16805) - 3412301..3414061 (+) 1761 WP_151217947.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23155.72 Da        Isoelectric Point: 9.5609

>NTDB_id=708311 NMD08_RS16840 WP_151225160.1 3408809..3409423(-) (sxy/tfoX) [Citrobacter meridianamericanus strain OT146]
MKELSYARIYKSQEYLASLGAIHYRSLFGSYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDALWQNQPQLVMLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVGGVHEAALPATRRRELVEWVSSLTSKLGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=708311 NMD08_RS16840 WP_151225160.1 3408809..3409423(-) (sxy/tfoX) [Citrobacter meridianamericanus strain OT146]
ATGAAAGAACTTTCTTATGCAAGGATCTATAAATCTCAAGAATATCTGGCTTCTTTGGGGGCGATTCACTATCGCTCATT
GTTTGGCAGCTACAGTCTGACTGTTGGGGATACGGTCTTTGCCATGGTTGCCAGCGGTGAACTATATCTTCGGGCATGTG
AGCAGAGCGCTCAGTACTGTGTAAAAAACTCTCCTGTCTGGCTGACATTTATCAAGCGCGGACGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCCGCAGTTGGTGATGCTATCACGCTATTCGCTGGATGCAGCTGT
TAAGGAAAAACAGAGCCGCTTTGCACAACATCGTCTGCGGGAGCTACCCAATATGACGTTTCATCTGGAGACTCTGCTAA
ATGAAGCAGGAATTAAAGATGAGGGAACATTGCGTTCGCTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCCGCCTTGACGGTAAAAATACTCTACGCCCTTGAAGGAGCGGTCGGGGGAGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCGGGAGCTGGTAGAGTGGGTGAGTTCTCTTACGTCGAAACTGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.652

98.529

0.686