Detailed information NTG0708292

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: NMD13_RS25645
• Genome accession: NZ_CP101034
• Coordinates: 5531602..5532666 (-)
• Length: 354 a.a.
• NCBI ID: WP_207882126.1
• Uniprot ID: -
• Organism: Pseudomonas nitroreducens strain OT171
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5526602..5537666

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMD13_RS25620 (NMD13_25515)	aroK	5527122..5527613 (-)	492	WP_370601718.1	shikimate kinase AroK	-
NMD13_RS25625 (NMD13_25520)	pilQ	5527649..5529787 (-)	2139	WP_370600190.1	type IV pilus secretin PilQ	Machinery gene
NMD13_RS25630 (NMD13_25525)	pilP	5529841..5530365 (-)	525	WP_275608988.1	type 4a pilus biogenesis lipoprotein PilP	-
NMD13_RS25635 (NMD13_25530)	pilO	5530362..5531012 (-)	651	WP_275608989.1	type 4a pilus biogenesis protein PilO	-
NMD13_RS25640 (NMD13_25535)	pilN	5531009..5531602 (-)	594	WP_275608990.1	type 4a pilus biogenesis protein PilN	-
NMD13_RS25645 (NMD13_25540)	pilM	5531602..5532666 (-)	1065	WP_207882126.1	pilus assembly protein PilM	Machinery gene
NMD13_RS25650 (NMD13_25545)	-	5532852..5535290 (+)	2439	WP_343576632.1	penicillin-binding protein 1A	-
NMD13_RS25655 (NMD13_25550)	-	5535471..5535938 (+)	468	WP_275608992.1	hypothetical protein	-
NMD13_RS25660 (NMD13_25555)	-	5535932..5536426 (-)	495	WP_275608993.1	YgjP-like metallopeptidase domain-containing protein	-
NMD13_RS25665 (NMD13_25560)	-	5536477..5537247 (-)	771	WP_343576629.1	class I SAM-dependent methyltransferase	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37761.04 Da
• Isoelectric Point: 4.4526

>NTDB_id=708292 NMD13_RS25645 WP_207882126.1 5531602..5532666(-) (pilM) [Pseudomonas nitroreducens strain OT171]
MLGLFNKKANTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIAELEGVGQALSRVVAKARTGVKTAAV
AVAGSAVITKTIEMDGGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGASARNAERVDVLLAACRKENVEVREAALAL
SGLTAKVVDVEAYALERAFSLLGDQLGGNADELTVAVVDIGATMTTLSVLHHGRTIYTREQLFGGRQLTEEIQRRYGLSV
EEAGLAKKQGGLPDDYDSEVLQPFKDAVVQQVSRSLQFFFAAGQFNDVDYILLAGGTASIPDLDRLIQQKIGTPTLVANP
FTDMVLSGKVNAGALASDAPALMIACGLAMRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=708292 NMD13_RS25645 WP_207882126.1 5531602..5532666(-) (pilM) [Pseudomonas nitroreducens strain OT171]
GTGCTAGGGCTATTCAATAAGAAAGCGAACACGCTGCTGGGGATAGACATCAGTTCGACTTCGGTCAAACTCCTCGAACT
GAGCCGCTCGGGAGGCCGCTACAAGGTAGAGGCCTACGCCGTGGAGCCGCTCCCTCCCAATGCAGTGGTAGAAAAGAACA
TCGCTGAACTGGAGGGTGTCGGCCAGGCGTTGTCACGTGTGGTCGCCAAGGCGCGCACCGGCGTGAAGACGGCTGCGGTC
GCGGTCGCTGGCTCGGCGGTCATCACCAAGACCATCGAGATGGATGGCGGTCTCTCGGAAGACGAGCTGGAAAACCAGCT
CAAGATCGAGGCCGACCAGTACATTCCCTATCCCCTCGAAGAAGTCGCGATCGACTTTGAAGTCCAGGGCGCATCCGCAC
GGAACGCCGAGCGCGTTGACGTACTCCTCGCCGCCTGTCGGAAGGAAAACGTTGAAGTGCGTGAGGCGGCGCTGGCGCTG
TCGGGGCTGACCGCCAAGGTCGTCGACGTCGAGGCCTACGCGCTGGAGCGAGCGTTCAGTCTGCTCGGCGATCAGTTGGG
CGGCAATGCCGACGAGCTCACAGTTGCGGTGGTCGACATCGGCGCCACCATGACCACGCTGAGCGTGCTGCACCACGGCC
GCACCATCTATACACGCGAACAGCTGTTCGGCGGGCGCCAGCTCACCGAGGAGATTCAGCGTCGCTATGGCCTGTCGGTG
GAAGAAGCTGGGCTTGCCAAGAAGCAGGGCGGTCTTCCGGATGACTATGACAGCGAAGTTTTGCAACCGTTCAAGGATGC
GGTCGTTCAACAGGTCTCCCGTTCGCTGCAGTTCTTCTTCGCCGCCGGTCAGTTCAACGACGTGGACTACATCCTGCTGG
CAGGCGGAACGGCTTCCATTCCGGACCTGGACAGATTGATCCAGCAGAAGATCGGTACTCCGACACTCGTGGCCAACCCC
TTCACCGACATGGTGCTGAGCGGAAAGGTCAATGCGGGGGCGCTGGCCAGTGACGCGCCGGCGCTGATGATTGCCTGCGG
TCTGGCGATGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Acinetobacter baumannii D1279779	57.062	100	0.571
comM	Acinetobacter nosocomialis M2	57.062	100	0.571
comM	Acinetobacter baylyi ADP1	53.107	100	0.531
pilM	Legionella pneumophila strain ERS1305867	46.045	100	0.46