Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD16_RS16875 Genome accession   NZ_CP101027
Coordinates   3358922..3359518 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain OT202     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3353922..3364518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD16_RS16860 (NMD16_16795) helD 3354130..3356184 (-) 2055 WP_009485779.1 DNA helicase IV -
  NMD16_RS16865 (NMD16_16800) - 3356309..3356755 (+) 447 WP_002898425.1 YccF domain-containing protein -
  NMD16_RS16870 (NMD16_16805) yccS 3356773..3358908 (+) 2136 WP_002898422.1 YccS family putative transporter -
  NMD16_RS16875 (NMD16_16810) sxy/tfoX 3358922..3359518 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  NMD16_RS16880 (NMD16_16815) sulA 3359867..3360376 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  NMD16_RS16885 (NMD16_16820) ompA 3360729..3361799 (+) 1071 WP_002898408.1 porin OmpA -
  NMD16_RS16890 (NMD16_16825) matP 3361931..3362383 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  NMD16_RS16895 (NMD16_16830) - 3362569..3364326 (+) 1758 WP_016529118.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=708230 NMD16_RS16875 WP_004150836.1 3358922..3359518(-) (sxy/tfoX) [Klebsiella pneumoniae strain OT202]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=708230 NMD16_RS16875 WP_004150836.1 3358922..3359518(-) (sxy/tfoX) [Klebsiella pneumoniae strain OT202]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51