Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD23_RS16200 Genome accession   NZ_CP101017
Coordinates   3329850..3330473 (-) Length   207 a.a.
NCBI ID   WP_026612357.1    Uniprot ID   A0AAW9LN46
Organism   Klebsiella aerogenes strain OT206     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3317192..3331432 3329850..3330473 within 0


Gene organization within MGE regions


Location: 3317192..3331432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD23_RS16175 (NMD23_16115) - 3324025..3324438 (-) 414 WP_327061476.1 CoA-binding protein -
  NMD23_RS16180 (NMD23_16120) mgsA 3324596..3325054 (+) 459 WP_015367424.1 methylglyoxal synthase -
  NMD23_RS16185 (NMD23_16125) helD 3325085..3327139 (-) 2055 WP_370610829.1 DNA helicase IV -
  NMD23_RS16190 (NMD23_16130) - 3327263..3327709 (+) 447 WP_182940677.1 YccF domain-containing protein -
  NMD23_RS16195 (NMD23_16135) yccS 3327727..3329862 (+) 2136 WP_182940679.1 YccS family putative transporter -
  NMD23_RS16200 (NMD23_16140) sxy/tfoX 3329850..3330473 (-) 624 WP_026612357.1 TfoX/Sxy family DNA transformation protein Regulator
  NMD23_RS16205 (NMD23_16145) sulA 3330923..3331432 (+) 510 WP_020079240.1 SOS-induced cell division inhibitor SulA -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23612.33 Da        Isoelectric Point: 10.0181

>NTDB_id=708160 NMD23_RS16200 WP_026612357.1 3329850..3330473(-) (sxy/tfoX) [Klebsiella aerogenes strain OT206]
MKKISKLRFLQFQECLSPLGKISSRPLFGGYSLAIENTVFAMVAEGEIYLRVCEQSASYRVEHHSPMLMMRKNGRPVALK
YYRIDEALWQDSKMLFHLSQLSLHSARSEKQHQRDSGRLKNLPNISFHMELMLIHAGITDVKMLRTLGAEKSWLKLREHN
KGISINVLESLAGAIAGIHSAALPAQRRQELREWANTQGYSVEDYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=708160 NMD23_RS16200 WP_026612357.1 3329850..3330473(-) (sxy/tfoX) [Klebsiella aerogenes strain OT206]
ATGAAGAAAATTTCAAAATTACGGTTCCTCCAGTTTCAGGAGTGCCTTTCCCCCTTAGGTAAAATCAGTAGCCGGCCTTT
ATTCGGCGGGTATAGTCTGGCGATTGAAAATACCGTATTCGCCATGGTGGCTGAGGGCGAAATCTATCTTAGGGTTTGCG
AACAAAGCGCCTCTTATCGGGTTGAACATCACAGCCCGATGCTGATGATGCGCAAGAATGGCCGGCCAGTGGCCTTAAAG
TATTACCGGATAGATGAAGCACTATGGCAGGACAGTAAAATGCTGTTTCACCTATCGCAGCTGTCATTGCATTCGGCGCG
AAGCGAAAAGCAGCATCAGCGTGATTCCGGCAGACTAAAGAATTTGCCTAATATCAGCTTCCATATGGAGTTGATGTTGA
TCCATGCCGGAATAACCGATGTGAAAATGCTGCGTACACTCGGGGCGGAAAAGAGCTGGTTAAAATTGAGAGAGCATAAT
AAAGGAATATCAATCAATGTCCTTGAGTCCCTGGCGGGCGCGATTGCCGGCATTCATTCCGCCGCGCTCCCGGCGCAGCG
GCGCCAGGAGCTACGGGAGTGGGCTAATACACAAGGATACAGCGTGGAGGATTATTCCGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.777

95.169

0.493