Detailed information NTG0708103

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PIC92_RS17920
• Genome accession: NZ_CP116115
• Coordinates: 3629306..3630298 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain DETEC-P793
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3624306..3635298

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PIC92_RS17900 (PIC92_17900)	ygbM	3624937..3625713 (+)	777	WP_001539449.1	HPr family phosphocarrier protein	-
PIC92_RS17905 (PIC92_17905)	ygbN	3625802..3627166 (+)	1365	WP_000104433.1	GntP family transporter	-
PIC92_RS17910 (PIC92_17910)	-	3627309..3628352 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
PIC92_RS17915 (PIC92_17915)	-	3628577..3629128 (+)	552	WP_001179442.1	flavodoxin family protein	-
PIC92_RS17920 (PIC92_17920)	rpoS	3629306..3630298 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PIC92_RS17925 (PIC92_17925)	nlpD	3630361..3631455 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PIC92_RS17930 (PIC92_17930)	pcm	3631640..3632266 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
PIC92_RS17935 (PIC92_17935)	surE	3632260..3633021 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PIC92_RS17940 (PIC92_17940)	truD	3633002..3634051 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
PIC92_RS17945 (PIC92_17945)	ispF	3634048..3634527 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PIC92_RS17950 (PIC92_17950)	ispD	3634527..3635237 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=708103 PIC92_RS17920 WP_000081550.1 3629306..3630298(-) (rpoS) [Escherichia coli strain DETEC-P793]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=708103 PIC92_RS17920 WP_000081550.1 3629306..3630298(-) (rpoS) [Escherichia coli strain DETEC-P793]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715