Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PIC92_RS05940 Genome accession   NZ_CP116115
Coordinates   1233706..1234311 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain DETEC-P793     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1228706..1239311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC92_RS05910 (PIC92_05910) rsmS 1229411..1229572 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  PIC92_RS05915 (PIC92_05915) priC 1229586..1230113 (-) 528 WP_000844854.1 primosomal replication protein N'' -
  PIC92_RS05920 (PIC92_05920) ybaN 1230183..1230560 (+) 378 WP_001188900.1 DUF454 family protein -
  PIC92_RS05925 (PIC92_05925) apt 1230713..1231264 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PIC92_RS05930 (PIC92_05930) dnaX 1231393..1233324 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  PIC92_RS05935 (PIC92_05935) ybaB 1233377..1233706 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PIC92_RS05940 (PIC92_05940) recR 1233706..1234311 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PIC92_RS05945 (PIC92_05945) htpG 1234421..1236295 (+) 1875 WP_000678189.1 molecular chaperone HtpG -
  PIC92_RS05950 (PIC92_05950) adk 1236476..1237120 (+) 645 WP_001313630.1 adenylate kinase -
  PIC92_RS05955 (PIC92_05955) hemH 1237252..1238214 (+) 963 WP_001250114.1 ferrochelatase -
  PIC92_RS05960 (PIC92_05960) aes 1238189..1239157 (-) 969 WP_000801820.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=708073 PIC92_RS05940 WP_001195025.1 1233706..1234311(+) (recR) [Escherichia coli strain DETEC-P793]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=708073 PIC92_RS05940 WP_001195025.1 1233706..1234311(+) (recR) [Escherichia coli strain DETEC-P793]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443