Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD29_RS15340 Genome accession   NZ_CP100996
Coordinates   3055780..3056409 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ET151     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3050780..3061409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD29_RS15325 (NMD29_15245) helD 3051022..3053076 (-) 2055 WP_000420536.1 DNA helicase IV -
  NMD29_RS15330 (NMD29_15250) yccF 3053199..3053645 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NMD29_RS15335 (NMD29_15255) yccS 3053655..3055817 (+) 2163 WP_000875061.1 YccS family putative transporter -
  NMD29_RS15340 (NMD29_15260) sxy/tfoX 3055780..3056409 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NMD29_RS15345 (NMD29_15265) sulA 3056628..3057137 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  NMD29_RS15350 (NMD29_15270) ompA 3057494..3058546 (+) 1053 WP_001361736.1 porin OmpA -
  NMD29_RS15355 (NMD29_15275) matP 3058622..3059074 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NMD29_RS15360 (NMD29_15280) ycbZ 3059260..3061020 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=708050 NMD29_RS15340 WP_000839153.1 3055780..3056409(-) (sxy/tfoX) [Escherichia coli strain ET151]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=708050 NMD29_RS15340 WP_000839153.1 3055780..3056409(-) (sxy/tfoX) [Escherichia coli strain ET151]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1