Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD30_RS13740 Genome accession   NZ_CP100994
Coordinates   2804707..2805336 (-) Length   209 a.a.
NCBI ID   WP_000793792.1    Uniprot ID   A0A3T8SP29
Organism   Escherichia coli strain ET201     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2799707..2810336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD30_RS13725 (NMD30_13635) helD 2799949..2802003 (-) 2055 WP_000420536.1 DNA helicase IV -
  NMD30_RS13730 (NMD30_13640) yccF 2802126..2802572 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NMD30_RS13735 (NMD30_13645) yccS 2802582..2804744 (+) 2163 WP_140436899.1 YccS family putative transporter -
  NMD30_RS13740 (NMD30_13650) sxy/tfoX 2804707..2805336 (-) 630 WP_000793792.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NMD30_RS13745 (NMD30_13655) sulA 2805555..2806064 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NMD30_RS13750 (NMD30_13660) ompA 2806421..2807473 (+) 1053 WP_000750419.1 porin OmpA -
  NMD30_RS13755 (NMD30_13665) matP 2807549..2808001 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  NMD30_RS13760 (NMD30_13670) ycbZ 2808187..2809947 (+) 1761 WP_000156495.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24174.04 Da        Isoelectric Point: 9.2180

>NTDB_id=708028 NMD30_RS13740 WP_000793792.1 2804707..2805336(-) (sxy/tfoX) [Escherichia coli strain ET201]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=708028 NMD30_RS13740 WP_000793792.1 2804707..2805336(-) (sxy/tfoX) [Escherichia coli strain ET201]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGGATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTAGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T8SP29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995