Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD33_RS14230 Genome accession   NZ_CP100981
Coordinates   2915285..2915914 (-) Length   209 a.a.
NCBI ID   WP_052909792.1    Uniprot ID   -
Organism   Escherichia coli strain ET220     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2910285..2920914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD33_RS14215 (NMD33_14150) helD 2910527..2912581 (-) 2055 WP_001295354.1 DNA helicase IV -
  NMD33_RS14220 (NMD33_14155) yccF 2912704..2913150 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NMD33_RS14225 (NMD33_14160) yccS 2913160..2915322 (+) 2163 WP_000875061.1 YccS family putative transporter -
  NMD33_RS14230 (NMD33_14165) sxy/tfoX 2915285..2915914 (-) 630 WP_052909792.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NMD33_RS14235 (NMD33_14170) sulA 2916133..2916642 (+) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  NMD33_RS14240 (NMD33_14175) ompA 2916999..2918039 (+) 1041 WP_000750416.1 porin OmpA -
  NMD33_RS14245 (NMD33_14180) matP 2918115..2918567 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NMD33_RS14250 (NMD33_14185) ycbZ 2918753..2920513 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24159.07 Da        Isoelectric Point: 9.2180

>NTDB_id=707984 NMD33_RS14230 WP_052909792.1 2915285..2915914(-) (sxy/tfoX) [Escherichia coli strain ET220]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVILN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=707984 NMD33_RS14230 WP_052909792.1 2915285..2915914(-) (sxy/tfoX) [Escherichia coli strain ET220]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTATCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995