Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PIC05_RS17315 Genome accession   NZ_CP116106
Coordinates   3543210..3543815 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain DETEC-P829     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3538210..3548815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC05_RS17295 (PIC05_17290) aes 3538351..3539310 (+) 960 WP_000801838.1 acetyl esterase -
  PIC05_RS17300 (PIC05_17295) hemH 3539307..3540269 (-) 963 WP_001250120.1 ferrochelatase -
  PIC05_RS17305 (PIC05_17300) adk 3540401..3541045 (-) 645 WP_001696974.1 adenylate kinase -
  PIC05_RS17310 (PIC05_17305) htpG 3541226..3543100 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  PIC05_RS17315 (PIC05_17310) recR 3543210..3543815 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PIC05_RS17320 (PIC05_17315) ybaB 3543815..3544144 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PIC05_RS17325 (PIC05_17320) dnaX 3544197..3546128 (-) 1932 WP_000122007.1 DNA polymerase III subunit gamma/tau -
  PIC05_RS17330 (PIC05_17325) apt 3546257..3546808 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PIC05_RS17335 (PIC05_17330) ybaN 3546961..3547338 (-) 378 WP_001188905.1 DUF454 family protein -
  PIC05_RS17340 (PIC05_17335) priC 3547408..3547935 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  PIC05_RS17345 (PIC05_17340) rsmS 3547949..3548110 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=707943 PIC05_RS17315 WP_001195025.1 3543210..3543815(-) (recR) [Escherichia coli strain DETEC-P829]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=707943 PIC05_RS17315 WP_001195025.1 3543210..3543815(-) (recR) [Escherichia coli strain DETEC-P829]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGATGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443