Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H7678_RS00265 Genome accession   NZ_AP023393
Coordinates   35310..36074 (+) Length   254 a.a.
NCBI ID   WP_012766408.1    Uniprot ID   A0A9X9GAR3
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 89     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 30310..41074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7678_RS00255 (SDSE89_00180) - 32767..33969 (+) 1203 WP_003062289.1 CHAP domain-containing protein -
  H7678_RS00260 (SDSE89_00190) - 34123..35085 (+) 963 WP_003059859.1 ribose-phosphate diphosphokinase -
  H7678_RS00265 (SDSE89_00200) recO 35310..36074 (+) 765 WP_012766408.1 DNA repair protein RecO Machinery gene
  H7678_RS00270 (SDSE89_00210) plsX 36181..37188 (+) 1008 WP_015016512.1 phosphate acyltransferase PlsX -
  H7678_RS00275 (SDSE89_00220) - 37181..37423 (+) 243 WP_003062587.1 phosphopantetheine-binding protein -
  H7678_RS00280 (SDSE89_00230) purC 37589..38299 (+) 711 WP_003060240.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 30015.21 Da        Isoelectric Point: 5.7481

>NTDB_id=70792 H7678_RS00265 WP_012766408.1 35310..36074(+) (recO) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
MQLNESLGIVLFNRNYREDDKLVKIFTETAGKRMFFVKHISRSKLSSVIQPLTAADFIFKLNESGLSYIDDYNHVDTYQQ
INQDLFRLSYASYVVALADAAISDNEPDPHLFAFLKKTLDLMEEGLDYEVLTNIFEIQVLERFGIRINFHDCVFCHRVGL
PFDFSHHYSGVLCPEHYHKDDYRNHLDPNVIYLLDRFQTIQFDELRTISLNDEMKRKLRYFIDELYHDYVGIKLKSKTFI
DDLAKWGDIMKPKD

Nucleotide


Download         Length: 765 bp        

>NTDB_id=70792 H7678_RS00265 WP_012766408.1 35310..36074(+) (recO) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
ATGCAGTTAAACGAGTCATTGGGAATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTGGTCAAGATATTCAC
AGAGACAGCAGGCAAACGTATGTTTTTCGTGAAACATATTAGTCGTTCTAAACTTTCTTCCGTCATTCAACCTTTAACGG
CTGCTGACTTTATATTTAAGTTGAACGAATCAGGTCTTTCTTATATTGACGACTACAATCATGTGGATACTTATCAACAG
ATTAATCAGGACCTTTTTCGACTTTCCTATGCAAGTTATGTAGTGGCTTTGGCAGATGCCGCTATTTCAGATAATGAGCC
AGATCCTCACCTCTTTGCCTTTCTGAAAAAGACACTTGATTTAATGGAAGAGGGGTTGGATTACGAGGTTTTGACCAACA
TTTTTGAAATCCAAGTTTTAGAGCGTTTTGGGATTAGAATAAACTTTCATGACTGTGTTTTTTGTCATCGTGTCGGTTTA
CCATTTGATTTTTCACATCACTATTCGGGTGTGCTGTGCCCTGAACATTATCATAAAGATGACTACCGGAATCATCTAGA
TCCTAATGTCATCTATTTACTAGACCGTTTTCAAACCATTCAGTTTGATGAATTGAGAACCATTTCTTTAAATGATGAGA
TGAAAAGAAAACTTCGTTATTTTATTGATGAATTGTATCATGACTATGTAGGAATCAAGTTAAAAAGTAAAACGTTTATT
GATGATTTAGCTAAATGGGGCGATATTATGAAACCAAAGGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X9GAR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.821

96.85

0.618

Multiple sequence alignment