Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD37_RS14955 Genome accession   NZ_CP100966
Coordinates   3119562..3120191 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ET350     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3114562..3125191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD37_RS14940 (NMD37_14880) helD 3114804..3116858 (-) 2055 WP_000420536.1 DNA helicase IV -
  NMD37_RS14945 (NMD37_14885) yccF 3116981..3117427 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NMD37_RS14950 (NMD37_14890) yccS 3117437..3119599 (+) 2163 WP_000323868.1 YccS family putative transporter -
  NMD37_RS14955 (NMD37_14895) sxy/tfoX 3119562..3120191 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NMD37_RS14960 (NMD37_14900) sulA 3120410..3120919 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  NMD37_RS14965 (NMD37_14905) ompA 3121276..3122328 (+) 1053 WP_032223517.1 porin OmpA -
  NMD37_RS14970 (NMD37_14910) matP 3122405..3122857 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  NMD37_RS14975 (NMD37_14915) ycbZ 3123043..3124803 (+) 1761 WP_087900816.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=707917 NMD37_RS14955 WP_000839153.1 3119562..3120191(-) (sxy/tfoX) [Escherichia coli strain ET350]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=707917 NMD37_RS14955 WP_000839153.1 3119562..3120191(-) (sxy/tfoX) [Escherichia coli strain ET350]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1