Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | K6J54_RS02965 | Genome accession | NZ_AP018766 |
| Coordinates | 599789..600202 (+) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q4QNA9 |
| Organism | Haemophilus influenzae strain CHBN-II-3 isolate 13H41 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 594789..605202
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J54_RS02945 (CHBNII3_05580) | - | 595277..597871 (-) | 2595 | WP_042593320.1 | penicillin-binding protein 1A | - |
| K6J54_RS02950 (CHBNII3_05590) | comA | 597970..598767 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| K6J54_RS02955 (CHBNII3_05600) | comB | 598768..599274 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| K6J54_RS02960 (CHBNII3_05610) | comC | 599271..599792 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| K6J54_RS02965 (CHBNII3_05620) | comD | 599789..600202 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| K6J54_RS02970 (CHBNII3_05630) | comE | 600212..601549 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| K6J54_RS02975 (CHBNII3_05640) | - | 601562..602248 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| K6J54_RS02980 (CHBNII3_05650) | nfuA | 602324..602920 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| K6J54_RS02985 (CHBNII3_05660) | nudC | 602987..603781 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| K6J54_RS02990 (CHBNII3_05670) | - | 603817..604407 (+) | 591 | WP_005686892.1 | YjaG family protein | - |
| K6J54_RS02995 (CHBNII3_05680) | - | 604547..604819 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=70791 K6J54_RS02965 WP_011272047.1 599789..600202(+) (comD) [Haemophilus influenzae strain CHBN-II-3 isolate 13H41]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=70791 K6J54_RS02965 WP_011272047.1 599789..600202(+) (comD) [Haemophilus influenzae strain CHBN-II-3 isolate 13H41]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |