Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   PIC05_RS03785 Genome accession   NZ_CP116106
Coordinates   781354..782565 (-) Length   403 a.a.
NCBI ID   WP_000546115.1    Uniprot ID   -
Organism   Escherichia coli strain DETEC-P829     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 776354..787565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC05_RS03770 (PIC05_03770) - 777736..778467 (+) 732 WP_000584102.1 glycosyltransferase family 2 protein -
  PIC05_RS03775 (PIC05_03775) - 778556..779725 (+) 1170 WP_000685103.1 nucleotide sugar dehydrogenase -
  PIC05_RS03780 (PIC05_03780) - 779854..781194 (+) 1341 WP_001389266.1 glycosyltransferase family 2 protein -
  PIC05_RS03785 (PIC05_03785) kpsS 781354..782565 (-) 1212 WP_000546115.1 capsule biosynthesis protein Regulator
  PIC05_RS03790 (PIC05_03790) - 782600..784627 (-) 2028 WP_000579515.1 capsular polysaccharide biosynthesis protein -
  PIC05_RS03795 (PIC05_03795) kdsB 784624..785364 (-) 741 WP_000030754.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PIC05_RS03800 (PIC05_03800) - 785374..787050 (-) 1677 WP_001296395.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 48284.97 Da        Isoelectric Point: 10.2148

>NTDB_id=707907 PIC05_RS03785 WP_000546115.1 781354..782565(-) (kpsS) [Escherichia coli strain DETEC-P829]
MHGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRLLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPNMKLFKKFRGYLLVKTQVNAVYYGEMIFNKIKKY
KKR

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=707907 PIC05_RS03785 WP_000546115.1 781354..782565(-) (kpsS) [Escherichia coli strain DETEC-P829]
ATGCACGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTCTTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGCGACTGCCGCCTATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAATGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGAATATGAAACTGTTTAAGAAGT
TTCGAGGGTATTTATTGGTTAAGACGCAGGTTAATGCGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAAAAATAT
AAAAAAAGATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.646

98.263

0.39