Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD40_RS14930 Genome accession   NZ_CP100958
Coordinates   3014638..3015267 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ET450     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3009638..3020267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD40_RS14915 (NMD40_14825) helD 3009880..3011934 (-) 2055 WP_000420536.1 DNA helicase IV -
  NMD40_RS14920 (NMD40_14830) yccF 3012057..3012503 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NMD40_RS14925 (NMD40_14835) yccS 3012513..3014675 (+) 2163 WP_000875061.1 YccS family putative transporter -
  NMD40_RS14930 (NMD40_14840) sxy/tfoX 3014638..3015267 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NMD40_RS14935 (NMD40_14845) sulA 3015486..3015995 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  NMD40_RS14940 (NMD40_14850) ompA 3016352..3017404 (+) 1053 WP_001361736.1 porin OmpA -
  NMD40_RS14945 (NMD40_14855) matP 3017480..3017932 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NMD40_RS14950 (NMD40_14860) ycbZ 3018118..3019878 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=707874 NMD40_RS14930 WP_000839153.1 3014638..3015267(-) (sxy/tfoX) [Escherichia coli strain ET450]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=707874 NMD40_RS14930 WP_000839153.1 3014638..3015267(-) (sxy/tfoX) [Escherichia coli strain ET450]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1