Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD41_RS13890 Genome accession   NZ_CP100954
Coordinates   2813639..2814268 (-) Length   209 a.a.
NCBI ID   WP_000793792.1    Uniprot ID   A0A3T8SP29
Organism   Escherichia coli strain ET474     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2808639..2819268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD41_RS13875 (NMD41_13800) helD 2808881..2810935 (-) 2055 WP_370605881.1 DNA helicase IV -
  NMD41_RS13880 (NMD41_13805) yccF 2811058..2811504 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NMD41_RS13885 (NMD41_13810) yccS 2811514..2813676 (+) 2163 WP_072146309.1 YccS family putative transporter -
  NMD41_RS13890 (NMD41_13815) sxy/tfoX 2813639..2814268 (-) 630 WP_000793792.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NMD41_RS13895 (NMD41_13820) sulA 2814487..2814996 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NMD41_RS13900 (NMD41_13825) ompA 2815353..2816405 (+) 1053 WP_000750419.1 porin OmpA -
  NMD41_RS13905 (NMD41_13830) matP 2816480..2816932 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  NMD41_RS13910 (NMD41_13835) ycbZ 2817118..2818878 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24174.04 Da        Isoelectric Point: 9.2180

>NTDB_id=707852 NMD41_RS13890 WP_000793792.1 2813639..2814268(-) (sxy/tfoX) [Escherichia coli strain ET474]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=707852 NMD41_RS13890 WP_000793792.1 2813639..2814268(-) (sxy/tfoX) [Escherichia coli strain ET474]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGCGCCATTATCGGGATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTAGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T8SP29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995