Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD42_RS14595 Genome accession   NZ_CP100950
Coordinates   2942862..2943491 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ET479     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2937862..2948491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD42_RS14580 (NMD42_14475) helD 2938104..2940158 (-) 2055 WP_000420536.1 DNA helicase IV -
  NMD42_RS14585 (NMD42_14480) yccF 2940281..2940727 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NMD42_RS14590 (NMD42_14485) yccS 2940737..2942899 (+) 2163 WP_000875020.1 YccS family putative transporter -
  NMD42_RS14595 (NMD42_14490) sxy/tfoX 2942862..2943491 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NMD42_RS14600 (NMD42_14495) sulA 2943710..2944219 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NMD42_RS14605 (NMD42_14500) ompA 2944576..2945616 (+) 1041 WP_000750416.1 porin OmpA -
  NMD42_RS14610 (NMD42_14505) matP 2945692..2946144 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NMD42_RS14615 (NMD42_14510) ycbZ 2946330..2948090 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=707830 NMD42_RS14595 WP_000839153.1 2942862..2943491(-) (sxy/tfoX) [Escherichia coli strain ET479]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=707830 NMD42_RS14595 WP_000839153.1 2942862..2943491(-) (sxy/tfoX) [Escherichia coli strain ET479]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1