Detailed information NTG0707793

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PIC52_RS19770
• Genome accession: NZ_CP116100
• Coordinates: 4100117..4101109 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain DETEC-P881
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4095117..4106109

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PIC52_RS19740 (PIC52_19740)	ispD	4095178..4095888 (+)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PIC52_RS19745 (PIC52_19745)	ispF	4095888..4096367 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PIC52_RS19750 (PIC52_19750)	truD	4096364..4097413 (+)	1050	WP_271287347.1	tRNA pseudouridine(13) synthase TruD	-
PIC52_RS19755 (PIC52_19755)	surE	4097394..4098155 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PIC52_RS19760 (PIC52_19760)	pcm	4098149..4098775 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PIC52_RS19765 (PIC52_19765)	nlpD	4098960..4100054 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PIC52_RS19770 (PIC52_19770)	rpoS	4100117..4101109 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PIC52_RS19775 (PIC52_19775)	-	4101287..4101838 (-)	552	WP_001179444.1	flavodoxin family protein	-
PIC52_RS19780 (PIC52_19780)	-	4102063..4103106 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
PIC52_RS19785 (PIC52_19785)	ygbN	4103249..4104613 (-)	1365	WP_000104433.1	GntP family transporter	-
PIC52_RS19790 (PIC52_19790)	ygbM	4104702..4105478 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=707793 PIC52_RS19770 WP_000081550.1 4100117..4101109(+) (rpoS) [Escherichia coli strain DETEC-P881]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=707793 PIC52_RS19770 WP_000081550.1 4100117..4101109(+) (rpoS) [Escherichia coli strain DETEC-P881]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715