Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   K6J54_RS00270 Genome accession   NZ_AP018766
Coordinates   57134..57850 (-) Length   238 a.a.
NCBI ID   WP_042593718.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-3 isolate 13H41     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52134..62850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J54_RS00250 (CHBNII3_00500) nrdR 52241..52690 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  K6J54_RS00255 (CHBNII3_00510) recC 52745..56110 (-) 3366 WP_105876669.1 exodeoxyribonuclease V subunit gamma -
  K6J54_RS00260 (CHBNII3_00520) comQ 56156..56443 (-) 288 WP_042593720.1 DUF5374 domain-containing protein Machinery gene
  K6J54_RS00265 (CHBNII3_00530) comP 56436..57119 (-) 684 WP_042593719.1 DUF2572 family protein Machinery gene
  K6J54_RS00270 (CHBNII3_00540) comO 57134..57850 (-) 717 WP_042593718.1 type II secretion system protein J Machinery gene
  K6J54_RS00275 (CHBNII3_00550) comN 57850..58362 (-) 513 WP_013526183.1 type II secretion system protein Machinery gene
  K6J54_RS00280 (CHBNII3_00560) suhB 58562..59365 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  K6J54_RS00285 (CHBNII3_00570) nrfE 59474..61381 (+) 1908 WP_042593717.1 heme lyase NrfEFG subunit NrfE -
  K6J54_RS00290 (CHBNII3_00580) - 61381..61911 (+) 531 WP_005664151.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26759.16 Da        Isoelectric Point: 9.6935

>NTDB_id=70779 K6J54_RS00270 WP_042593718.1 57134..57850(-) (comO) [Haemophilus influenzae strain CHBN-II-3 isolate 13H41]
MMKVLLKGKTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=70779 K6J54_RS00270 WP_042593718.1 57134..57850(-) (comO) [Haemophilus influenzae strain CHBN-II-3 isolate 13H41]
ATGATGAAAGTATTATTAAAAGGGAAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATGTTATTACATTTAAAGTTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACCTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.16

100

0.992

Multiple sequence alignment