Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   PIC52_RS18525 Genome accession   NZ_CP116100
Coordinates   3827277..3828509 (-) Length   410 a.a.
NCBI ID   WP_001606115.1    Uniprot ID   -
Organism   Escherichia coli strain DETEC-P881     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3822277..3833509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC52_RS18510 (PIC52_18510) - 3822944..3824317 (+) 1374 WP_001606120.1 bifunctional cytidylyltransferase/SDR family oxidoreductase -
  PIC52_RS18515 (PIC52_18515) - 3824891..3826030 (+) 1140 WP_021576458.1 hypothetical protein -
  PIC52_RS18520 (PIC52_18520) - 3826064..3827023 (+) 960 WP_001606116.1 hypothetical protein -
  PIC52_RS18525 (PIC52_18525) kpsS 3827277..3828509 (-) 1233 WP_001606115.1 capsule biosynthesis protein Regulator
  PIC52_RS18530 (PIC52_18530) - 3828544..3830571 (-) 2028 WP_001606114.1 capsular polysaccharide biosynthesis protein -
  PIC52_RS18535 (PIC52_18535) kdsB 3830568..3831308 (-) 741 WP_001606113.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PIC52_RS18540 (PIC52_18540) - 3831318..3832994 (-) 1677 WP_001606112.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 48927.60 Da        Isoelectric Point: 10.0596

>NTDB_id=707789 PIC52_RS18525 WP_001606115.1 3827277..3828509(-) (kpsS) [Escherichia coli strain DETEC-P881]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTTGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGEMIFNKIKLD
KYFQSLSCQV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=707789 PIC52_RS18525 WP_001606115.1 3827277..3828509(-) (kpsS) [Escherichia coli strain DETEC-P881]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAACGAGTTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGTCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGGCTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGACGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTTAAGACGCAGGTTAATGGGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAACTGGAT
AAATATTTTCAGAGCTTGTCGTGTCAAGTATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.646

96.585

0.383