Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PIC52_RS08275 Genome accession   NZ_CP116100
Coordinates   1663828..1664433 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain DETEC-P881     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1658828..1669433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC52_RS08255 (PIC52_08255) aes 1658969..1659928 (+) 960 WP_001606942.1 acetyl esterase -
  PIC52_RS08260 (PIC52_08260) hemH 1659925..1660887 (-) 963 WP_001606939.1 ferrochelatase -
  PIC52_RS08265 (PIC52_08265) adk 1661019..1661663 (-) 645 WP_001313630.1 adenylate kinase -
  PIC52_RS08270 (PIC52_08270) htpG 1661844..1663718 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  PIC52_RS08275 (PIC52_08275) recR 1663828..1664433 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PIC52_RS08280 (PIC52_08280) ybaB 1664433..1664762 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PIC52_RS08285 (PIC52_08285) dnaX 1664815..1666746 (-) 1932 WP_001606936.1 DNA polymerase III subunit gamma/tau -
  PIC52_RS08290 (PIC52_08290) apt 1666875..1667426 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PIC52_RS08295 (PIC52_08295) ybaN 1667579..1667956 (-) 378 WP_001188900.1 DUF454 family protein -
  PIC52_RS08300 (PIC52_08300) priC 1668026..1668553 (+) 528 WP_001526709.1 primosomal replication protein N'' -
  PIC52_RS08305 (PIC52_08305) rsmS 1668567..1668731 (+) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=707740 PIC52_RS08275 WP_001195025.1 1663828..1664433(-) (recR) [Escherichia coli strain DETEC-P881]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=707740 PIC52_RS08275 WP_001195025.1 1663828..1664433(-) (recR) [Escherichia coli strain DETEC-P881]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443