Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   H7679_RS08395 Genome accession   NZ_AP023392
Coordinates   1708154..1709815 (-) Length   553 a.a.
NCBI ID   WP_024378959.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT300     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1703154..1714815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7679_RS08360 (DAT300_16220) - 1703171..1703530 (+) 360 WP_014638446.1 STAS-like domain-containing protein -
  H7679_RS08365 (DAT300_16230) - 1703527..1704066 (+) 540 WP_024389932.1 type II toxin-antitoxin system VapC family toxin -
  H7679_RS08370 (DAT300_16240) - 1704193..1705335 (+) 1143 WP_024395993.1 tyrosine-type recombinase/integrase -
  H7679_RS08375 (DAT300_16250) - 1705468..1705743 (-) 276 WP_002936247.1 HU family DNA-binding protein -
  H7679_RS08380 (DAT300_16260) - 1705833..1706429 (-) 597 WP_002936249.1 YpmS family protein -
  H7679_RS08385 (DAT300_16270) - 1706401..1707234 (-) 834 WP_041179398.1 SGNH/GDSL hydrolase family protein -
  H7679_RS08390 (DAT300_16280) - 1707227..1708060 (-) 834 WP_024389930.1 DegV family protein -
  H7679_RS08395 (DAT300_16290) recN 1708154..1709815 (-) 1662 WP_024378959.1 DNA repair protein RecN Machinery gene
  H7679_RS08400 (DAT300_16300) - 1709818..1710243 (-) 426 WP_002936261.1 arginine repressor -
  H7679_RS08405 (DAT300_16310) - 1710236..1711057 (-) 822 WP_009910556.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  H7679_RS08410 (DAT300_16320) - 1711050..1711919 (-) 870 WP_063725330.1 polyprenyl synthetase family protein -
  H7679_RS08415 (DAT300_16330) - 1711919..1712134 (-) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  H7679_RS08420 (DAT300_16340) xseA 1712109..1713452 (-) 1344 WP_044674153.1 exodeoxyribonuclease VII large subunit -
  H7679_RS08425 (DAT300_16350) - 1713619..1714527 (+) 909 WP_024395989.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62747.94 Da        Isoelectric Point: 4.6542

>NTDB_id=70768 H7679_RS08395 WP_024378959.1 1708154..1709815(-) (recN) [Streptococcus suis strain DAT300]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRMDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=70768 H7679_RS08395 WP_024378959.1 1708154..1709815(-) (recN) [Streptococcus suis strain DAT300]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAATGGGATGACCATTCT
ATCTGGTGAAACAGGGGCAGGAAAGTCTATTATCATCGATGCCATGAACCTGATGTTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAGCTCATTATCCGCCGTGAAATCCTACAAAATGGCCGTTCGGTCAGCCGTGT
CAATGGGCAAATGGTTAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATCGAAGCAGCTGATTTGAAGTCTGGTGAAGATATTCAACTCAATC
AGGAACGCGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGTCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTGGACAATCTAGACT
TTGACGGCAATCGTCTCTTGCAATTGGAAAGTCGTATGGATTTGCTCAATACCATTACGAAGAAATATGGTGGGACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGTGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGAGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCTG
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTAGAATTTTACATCTCCACCAATCCTGGCGAAGACTTCAAACCACTGGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCAATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGGCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CAGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.509

100

0.448

Multiple sequence alignment