Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD50_RS14975 Genome accession   NZ_CP100922
Coordinates   2974359..2974988 (-) Length   209 a.a.
NCBI ID   WP_112021457.1    Uniprot ID   -
Organism   Escherichia coli strain ET734     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2969359..2979988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD50_RS14960 (NMD50_14890) helD 2969601..2971655 (-) 2055 WP_001295354.1 DNA helicase IV -
  NMD50_RS14965 (NMD50_14895) yccF 2971778..2972224 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NMD50_RS14970 (NMD50_14900) yccS 2972234..2974396 (+) 2163 WP_000875061.1 YccS family putative transporter -
  NMD50_RS14975 (NMD50_14905) sxy/tfoX 2974359..2974988 (-) 630 WP_112021457.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NMD50_RS14980 (NMD50_14910) sulA 2975207..2975716 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NMD50_RS14985 (NMD50_14915) ompA 2976073..2977113 (+) 1041 WP_337235869.1 porin OmpA -
  NMD50_RS14990 (NMD50_14920) matP 2977189..2977641 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NMD50_RS14995 (NMD50_14925) ycbZ 2977827..2979587 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24118.96 Da        Isoelectric Point: 8.9883

>NTDB_id=707651 NMD50_RS14975 WP_112021457.1 2974359..2974988(-) (sxy/tfoX) [Escherichia coli strain ET734]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLQQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=707651 NMD50_RS14975 WP_112021457.1 2974359..2974988(-) (sxy/tfoX) [Escherichia coli strain ET734]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCAGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995