Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   PIC22_RS10510 Genome accession   NZ_CP116088
Coordinates   2106647..2107639 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain DETEC-S565     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2101647..2112639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC22_RS10485 (PIC22_10480) ygbN 2102302..2103666 (+) 1365 WP_000104429.1 GntP family transporter -
  PIC22_RS10490 (PIC22_10485) - 2103705..2103941 (-) 237 WP_000562984.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  PIC22_RS10495 (PIC22_10490) - 2103952..2105379 (-) 1428 WP_000863195.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  PIC22_RS10500 (PIC22_10495) - 2105379..2105972 (-) 594 WP_000767718.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  PIC22_RS10505 (PIC22_10500) - 2106119..2106526 (+) 408 WP_001208070.1 MarR family winged helix-turn-helix transcriptional regulator -
  PIC22_RS10510 (PIC22_10505) rpoS 2106647..2107639 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  PIC22_RS10515 (PIC22_10510) nlpD 2107702..2108796 (-) 1095 WP_224692580.1 murein hydrolase activator NlpD -
  PIC22_RS10520 (PIC22_10515) pcm 2108981..2109607 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  PIC22_RS10525 (PIC22_10520) surE 2109601..2110362 (-) 762 WP_001349984.1 5'/3'-nucleotidase SurE -
  PIC22_RS10530 (PIC22_10525) truD 2110343..2111392 (-) 1050 WP_000568924.1 tRNA pseudouridine(13) synthase TruD -
  PIC22_RS10535 (PIC22_10530) ispF 2111389..2111868 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  PIC22_RS10540 (PIC22_10535) ispD 2111868..2112578 (-) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=707593 PIC22_RS10510 WP_000081550.1 2106647..2107639(-) (rpoS) [Escherichia coli strain DETEC-S565]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=707593 PIC22_RS10510 WP_000081550.1 2106647..2107639(-) (rpoS) [Escherichia coli strain DETEC-S565]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715