Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD53_RS14705 Genome accession   NZ_CP100909
Coordinates   2962181..2962810 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ET776     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2957181..2967810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD53_RS14690 (NMD53_14625) helD 2957423..2959477 (-) 2055 WP_063078987.1 DNA helicase IV -
  NMD53_RS14695 (NMD53_14630) yccF 2959600..2960046 (+) 447 WP_063078988.1 YccF domain-containing protein -
  NMD53_RS14700 (NMD53_14635) yccS 2960056..2962218 (+) 2163 WP_000875061.1 YccS family putative transporter -
  NMD53_RS14705 (NMD53_14640) sxy/tfoX 2962181..2962810 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NMD53_RS14710 (NMD53_14645) sulA 2963029..2963538 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NMD53_RS14715 (NMD53_14650) ompA 2963895..2964935 (+) 1041 WP_024201506.1 porin OmpA -
  NMD53_RS14720 (NMD53_14655) matP 2965011..2965463 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NMD53_RS14725 (NMD53_14660) ycbZ 2965649..2967409 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=707585 NMD53_RS14705 WP_000839153.1 2962181..2962810(-) (sxy/tfoX) [Escherichia coli strain ET776]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=707585 NMD53_RS14705 WP_000839153.1 2962181..2962810(-) (sxy/tfoX) [Escherichia coli strain ET776]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1