Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | K6J63_RS03390 | Genome accession | NZ_AP018765 |
| Coordinates | 659858..660271 (+) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q4QNA9 |
| Organism | Haemophilus influenzae strain CHBN-II-2 isolate 12H49 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 654858..665271
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J63_RS03370 (CHBNII2_06470) | - | 655346..657940 (-) | 2595 | WP_011272051.1 | penicillin-binding protein 1A | - |
| K6J63_RS03375 (CHBNII2_06480) | comA | 658039..658836 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| K6J63_RS03380 (CHBNII2_06490) | comB | 658837..659343 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| K6J63_RS03385 (CHBNII2_06500) | comC | 659340..659861 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| K6J63_RS03390 (CHBNII2_06510) | comD | 659858..660271 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| K6J63_RS03395 (CHBNII2_06520) | comE | 660281..661618 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| K6J63_RS03400 (CHBNII2_06530) | - | 661631..662317 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| K6J63_RS03405 (CHBNII2_06540) | nfuA | 662393..662989 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| K6J63_RS03410 (CHBNII2_06550) | nudC | 663056..663850 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| K6J63_RS03415 (CHBNII2_06560) | - | 663886..664476 (+) | 591 | WP_005686892.1 | YjaG family protein | - |
| K6J63_RS03420 (CHBNII2_06570) | - | 664616..664888 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=70758 K6J63_RS03390 WP_011272047.1 659858..660271(+) (comD) [Haemophilus influenzae strain CHBN-II-2 isolate 12H49]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=70758 K6J63_RS03390 WP_011272047.1 659858..660271(+) (comD) [Haemophilus influenzae strain CHBN-II-2 isolate 12H49]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |