Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   H7679_RS05945 Genome accession   NZ_AP023392
Coordinates   1200042..1203308 (-) Length   1088 a.a.
NCBI ID   WP_024395152.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT300     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1195042..1208308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7679_RS05935 (DAT300_11300) plsY 1195734..1196378 (+) 645 WP_015646902.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  H7679_RS05940 (DAT300_11310) rexA 1196389..1200042 (-) 3654 WP_024395151.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  H7679_RS05945 (DAT300_11320) rexB 1200042..1203308 (-) 3267 WP_024395152.1 ATP-dependent nuclease subunit B Machinery gene
  H7679_RS05950 (DAT300_11330) - 1203416..1203574 (-) 159 WP_015646905.1 hypothetical protein -
  H7679_RS05955 (DAT300_11340) obgE 1203949..1205262 (-) 1314 WP_032536533.1 GTPase ObgE -
  H7679_RS05960 (DAT300_11350) - 1205466..1205594 (-) 129 WP_002943675.1 DUF4044 domain-containing protein -
  H7679_RS05965 - 1205766..1206101 (-) 336 WP_079270670.1 hypothetical protein -
  H7679_RS05970 (DAT300_11360) uvrC 1206170..1207939 (-) 1770 WP_184495563.1 excinuclease ABC subunit UvrC Machinery gene

Sequence

Protein


Download         Length: 1088 a.a.        Molecular weight: 124272.43 Da        Isoelectric Point: 5.0906

>NTDB_id=70758 H7679_RS05945 WP_024395152.1 1200042..1203308(-) (rexB) [Streptococcus suis strain DAT300]
MKLFYTDIRNPLTQHLTDTSAEFAKEAKRVFYIAPNSLSFEMERKVLEYLPEQATFDIIVTRFGQLARYLMIDRKEAGQP
LDDVGLAMIFFRVLSQFEDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAIDSPDKQADLVKIFLAVTEILSK
EGFEHQSKLAQLTSLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSALNERVSEILIGVYASKKAVQATYAEGNVYQAN
VDFLRQLSAQFQTKATYIGQEPVLDSIGKFSKNMEAYYDYSGTMIDLTPADQEKIQLWEVVNQKEEVEQVATAIRQHVHQ
GARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMGHHPLVHFVESLERLRRYRFRAEDLLNLLKSGLYASISQK
DLDLFESYILFADMKGQAAFSRTFSVNGRADYDAEVIKEKRLVYDLNVLEPLRAKIMEPLNQLFKAGPQSGAALLEKFMA
FLEAIDLPKNMEKMSRNLSEVEQEKEEQVWKSFTHILENFHQIFGKEKLKMDDFLAILQAGMQASHYRTVPATVDVVNVK
SYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTEEEMEKVNLVSSSSSRFDLVSRENIKKNHAAMMSLLNAATEQLVIS
TPQIYNEGEDSLSPYIKILQKMGLKSEERGRIKTLSPQDIGHYKSLLSRLIESERPSLDNEEWEGKRAFWTVLVRHLKKK
LESQGIEIPTITGDIASKQLSDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVRNVLRLREQESIHPTAFQHGLLLHRI
FERVVMDQSELDFDQKVDKAILSTRDEAEFAMFYNQDADARYTEEVLDKIARSSATILRDNDLVEIDGQEKSFCQDKALV
FDLQNGKSVHVNGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKSQLVTYLAALQELDETKDKPVFGAMYLHLQD
PIIKLKDTKNLEQLEGAANTSLVYKGLFLKEESLGLNHFYQTRNQLYTEDEFAVLLNHNQELYKQAAMDILAGRFAINPY
TKDGRSVAGEQLKAITGFEADRHMGMARRLVKEAKRQDWMERMKGGQD

Nucleotide


Download         Length: 3267 bp        

>NTDB_id=70758 H7679_RS05945 WP_024395152.1 1200042..1203308(-) (rexB) [Streptococcus suis strain DAT300]
ATGAAATTATTCTATACAGATATTCGCAATCCTCTGACACAGCATTTAACGGATACCTCGGCAGAATTTGCTAAGGAAGC
TAAGCGAGTTTTTTACATTGCTCCAAACTCTCTATCCTTTGAGATGGAGCGAAAGGTCTTGGAATACCTGCCTGAACAGG
CAACTTTTGATATTATCGTGACCCGTTTTGGGCAATTGGCCCGCTATTTGATGATTGATAGGAAAGAAGCAGGTCAACCG
CTGGATGATGTTGGTCTGGCCATGATTTTCTTTCGTGTTCTATCGCAATTTGAAGATGGCGACTTGAAAGTCTATGGTCG
TTTGCAGACAGATTTTGGTTTCATTAACCAGCTAGTTGCTTTATACAAAGAATTGCAACGGGCAAATATGTCTATTTTGG
ACTTGGAAGCCATAGACTCACCAGATAAGCAGGCTGATTTGGTAAAGATTTTTCTGGCTGTAACTGAAATTTTGTCCAAA
GAAGGCTTTGAGCATCAGTCTAAGTTAGCACAGCTGACTAGCTTGGTGGAAACTGGTCAGTTGGATGAGCAGTTGAAGAA
CATTGTACTGGTGGTAGACGGATTTTCTCGTTTTTCGGCAGAAGAAGAAGCTTTAGTAAGTGCTTTAAATGAACGGGTGT
CGGAAATCCTGATTGGTGTATATGCCAGCAAGAAAGCTGTGCAAGCCACCTATGCGGAAGGCAATGTCTATCAAGCCAAC
GTTGACTTTTTACGTCAGTTATCAGCGCAGTTCCAGACTAAGGCTACTTATATTGGTCAAGAGCCAGTCTTGGACAGTAT
CGGTAAATTTTCAAAGAATATGGAAGCCTATTATGACTACAGCGGGACCATGATAGACTTGACTCCAGCAGATCAAGAAA
AAATCCAGCTATGGGAAGTCGTTAACCAAAAAGAAGAGGTGGAGCAGGTTGCGACTGCAATTCGTCAGCATGTGCATCAA
GGGGCTCGCTATAAAGACATTTTGTTGCTCTTGGGGGATGTGGATAGCTACAAGTTGCAGATTGGCAAGATTTTTGACAA
GTATGATATTCCTTACTATTTTGGCAAGGCAGAGGAGATGGGTCATCATCCGTTGGTCCATTTTGTGGAGTCCTTGGAAC
GTTTGCGCCGCTATCGTTTCCGAGCGGAAGACCTGCTCAATCTCCTCAAATCTGGTTTGTACGCCAGCATTTCCCAAAAG
GATCTGGACCTATTTGAGTCTTACATCCTCTTTGCGGATATGAAGGGGCAGGCTGCTTTTTCGAGGACTTTTTCGGTCAA
TGGCAGAGCAGACTATGATGCTGAAGTCATCAAGGAGAAAAGGCTTGTCTATGATTTGAATGTTTTGGAACCCCTACGTG
CTAAGATTATGGAGCCTTTGAACCAGTTGTTTAAGGCTGGACCACAATCTGGAGCTGCCTTGCTTGAGAAATTTATGGCA
TTTTTGGAGGCGATTGATCTTCCTAAAAATATGGAAAAAATGTCTCGAAATTTGAGCGAAGTAGAGCAAGAAAAAGAAGA
GCAGGTCTGGAAAAGTTTTACCCATATTCTTGAGAATTTTCATCAGATTTTCGGAAAAGAAAAATTGAAAATGGATGATT
TTCTGGCAATTTTACAGGCTGGAATGCAGGCCAGTCACTATCGTACCGTTCCTGCAACAGTTGATGTGGTCAATGTCAAA
TCCTATGATTTGATCGAGCCGCACACTGCAAAGTATGTTTATGCTATCGGAATGGGCCAGTCCAATTTTCCAAAAGTTGC
CAAGAATACCAGTCTATTGACGGAAGAAGAGATGGAAAAAGTCAATCTTGTCTCATCTAGTTCCTCACGTTTCGATTTGG
TCAGCCGAGAGAATATCAAGAAGAACCATGCTGCCATGATGTCTCTGCTTAATGCTGCGACGGAACAGTTAGTCATTTCA
ACTCCTCAGATTTATAACGAAGGTGAAGATAGTCTCTCCCCTTATATCAAGATTCTCCAAAAAATGGGGTTGAAATCCGA
AGAACGTGGTCGGATTAAAACACTTAGTCCACAAGATATCGGTCACTACAAGAGTCTCTTATCCCGTTTGATTGAGTCGG
AAAGACCATCTCTTGATAATGAAGAATGGGAAGGGAAGAGGGCCTTCTGGACAGTCTTGGTTCGCCATTTGAAGAAGAAA
TTGGAGTCGCAAGGCATTGAAATTCCGACCATTACTGGTGATATTGCTTCTAAACAACTTTCAGATGAAACCTTGGCTGC
TTTATATCCAGAGGATAAGCCCCTCAATCTTTCTGCATCCAGCTTGACCAATTTCTACAATAACCAATATCTTTACTTTG
TACGCAATGTGCTTCGCTTGCGGGAACAGGAATCCATCCATCCGACTGCCTTTCAGCATGGTTTGCTCTTGCATCGGATT
TTTGAACGAGTGGTCATGGACCAATCTGAGCTAGATTTTGATCAAAAAGTGGACAAGGCCATCCTAAGTACACGTGACGA
GGCAGAATTTGCTATGTTTTATAACCAAGATGCGGATGCTCGCTATACGGAGGAGGTGCTAGATAAGATTGCTCGTTCCA
GTGCGACTATTTTGCGGGATAATGATTTGGTTGAAATTGATGGCCAGGAAAAGAGTTTCTGTCAGGATAAGGCGCTGGTT
TTTGACCTTCAAAATGGTAAGAGTGTGCATGTAAATGGTACCATTGACCGCTTGGATACCTTACAAATCAATCAGGCTGT
CGGTGTTGTAGATTACAAGTCCAGTGACCAATCTTTTTCAGTTGGGGATTTTTACAATGGTCTCAAATCTCAGTTGGTGA
CCTACTTGGCAGCCTTACAAGAGCTGGATGAAACCAAGGATAAACCTGTTTTTGGAGCTATGTATTTGCATTTACAGGAT
CCGATTATCAAATTAAAAGACACGAAGAATTTAGAACAGCTAGAAGGAGCTGCCAATACTAGCTTGGTTTACAAGGGGCT
TTTCTTGAAGGAGGAAAGTCTGGGGCTCAATCATTTTTATCAGACTCGTAACCAACTCTACACGGAGGATGAGTTTGCGG
TTTTATTGAACCACAACCAAGAACTATACAAACAAGCTGCCATGGACATTCTGGCTGGTCGCTTTGCTATTAACCCTTAT
ACCAAAGATGGGCGTTCGGTGGCAGGTGAGCAGCTGAAGGCAATCACTGGTTTTGAGGCGGATCGGCACATGGGCATGGC
ACGGCGGTTGGTCAAAGAGGCCAAGCGTCAAGATTGGATGGAACGAATGAAAGGAGGTCAGGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(757-1041)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

45.15

100

0.458

Multiple sequence alignment