Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD55_RS15075 Genome accession   NZ_CP100906
Coordinates   3038235..3038864 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ET791     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3033235..3043864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD55_RS15060 (NMD55_14970) helD 3033477..3035531 (-) 2055 WP_000420533.1 DNA helicase IV -
  NMD55_RS15065 (NMD55_14975) yccF 3035654..3036100 (+) 447 WP_001261231.1 YccF domain-containing protein -
  NMD55_RS15070 (NMD55_14980) yccS 3036110..3038272 (+) 2163 WP_000875020.1 YccS family putative transporter -
  NMD55_RS15075 (NMD55_14985) sxy/tfoX 3038235..3038864 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NMD55_RS15080 (NMD55_14990) sulA 3039083..3039592 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NMD55_RS15085 (NMD55_14995) ompA 3039949..3040989 (+) 1041 WP_000750416.1 porin OmpA -
  NMD55_RS15090 (NMD55_15000) matP 3041065..3041517 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NMD55_RS15095 (NMD55_15005) ycbZ 3041703..3043463 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=707562 NMD55_RS15075 WP_000839153.1 3038235..3038864(-) (sxy/tfoX) [Escherichia coli strain ET791]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=707562 NMD55_RS15075 WP_000839153.1 3038235..3038864(-) (sxy/tfoX) [Escherichia coli strain ET791]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1