Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   PIC95_RS24400 Genome accession   NZ_CP116085
Coordinates   4955173..4956165 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain DETEC-S566     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4950173..4961165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC95_RS24390 (PIC95_24390) yieP 4953065..4953757 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  PIC95_RS24395 (PIC95_24395) mdtD 4953780..4955207 (+) 1428 WP_001280867.1 multidrug transporter subunit MdtD -
  PIC95_RS24400 (PIC95_24400) cytR 4955173..4956165 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  PIC95_RS24405 (PIC95_24405) rbsK 4956169..4957098 (-) 930 WP_001545694.1 ribokinase -
  PIC95_RS24410 (PIC95_24410) rbsB 4957224..4958114 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  PIC95_RS24415 (PIC95_24415) rbsC 4958139..4959104 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  PIC95_RS24420 (PIC95_24420) rbsA 4959109..4960614 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  PIC95_RS24425 (PIC95_24425) rbsD 4960622..4961041 (-) 420 WP_001296586.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=707560 PIC95_RS24400 WP_000224470.1 4955173..4956165(-) (cytR) [Escherichia coli strain DETEC-S566]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=707560 PIC95_RS24400 WP_000224470.1 4955173..4956165(-) (cytR) [Escherichia coli strain DETEC-S566]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACAGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATTGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACAACTATACACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTACAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364