Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMD56_RS15355 Genome accession   NZ_CP100901
Coordinates   3142395..3143024 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ET826     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3137395..3148024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD56_RS15340 (NMD56_15280) helD 3137637..3139691 (-) 2055 WP_000420536.1 DNA helicase IV -
  NMD56_RS15345 (NMD56_15285) yccF 3139814..3140260 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NMD56_RS15350 (NMD56_15290) yccS 3140270..3142432 (+) 2163 WP_073520158.1 YccS family putative transporter -
  NMD56_RS15355 (NMD56_15295) sxy/tfoX 3142395..3143024 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NMD56_RS15360 (NMD56_15300) sulA 3143243..3143752 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NMD56_RS15365 (NMD56_15305) ompA 3144109..3145161 (+) 1053 WP_000750419.1 porin OmpA -
  NMD56_RS15370 (NMD56_15310) matP 3145236..3145688 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  NMD56_RS15375 (NMD56_15315) ycbZ 3145874..3147634 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=707540 NMD56_RS15355 WP_000839153.1 3142395..3143024(-) (sxy/tfoX) [Escherichia coli strain ET826]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=707540 NMD56_RS15355 WP_000839153.1 3142395..3143024(-) (sxy/tfoX) [Escherichia coli strain ET826]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1