Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   H7679_RS05295 Genome accession   NZ_AP023392
Coordinates   1061192..1061860 (+) Length   222 a.a.
NCBI ID   WP_024385714.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT300     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1056192..1066860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7679_RS05265 (DAT300_10000) - 1057286..1057426 (+) 141 WP_032497540.1 hypothetical protein -
  H7679_RS05270 (DAT300_10010) - 1057439..1057828 (+) 390 WP_105114957.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  H7679_RS05275 (DAT300_10020) - 1057837..1058589 (+) 753 WP_105114956.1 ABC transporter ATP-binding protein -
  H7679_RS05280 (DAT300_10030) - 1058590..1060560 (+) 1971 WP_105114955.1 ABC transporter permease -
  H7679_RS05285 (DAT300_10040) relB 1060652..1060903 (+) 252 WP_044675807.1 type II toxin-antitoxin system RelB family antitoxin -
  H7679_RS05290 (DAT300_10050) - 1060887..1061153 (+) 267 WP_024397888.1 type II toxin-antitoxin system RelE family toxin -
  H7679_RS05295 (DAT300_10060) braR 1061192..1061860 (+) 669 WP_024385714.1 response regulator transcription factor Regulator
  H7679_RS05300 (DAT300_10070) - 1061857..1062798 (+) 942 WP_044674994.1 sensor histidine kinase -
  H7679_RS05305 (DAT300_10080) - 1062874..1064382 (+) 1509 WP_105114954.1 phosphomannomutase/phosphoglucomutase -
  H7679_RS05310 (DAT300_10090) xerS 1064452..1065522 (-) 1071 WP_105114953.1 tyrosine recombinase XerS Machinery gene
  H7679_RS11395 - 1065688..1065864 (-) 177 WP_228381310.1 hypothetical protein -
  H7679_RS05315 (DAT300_10100) - 1065870..1066214 (-) 345 WP_228381311.1 adenylyl-sulfate kinase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25577.43 Da        Isoelectric Point: 4.8895

>NTDB_id=70752 H7679_RS05295 WP_024385714.1 1061192..1061860(+) (braR) [Streptococcus suis strain DAT300]
MMKKEKIYIVEDEEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFI
SSSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSSELSINQFQLSLDGRFSNESEQVQLSPTETKIL
SALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLVK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=70752 H7679_RS05295 WP_024385714.1 1061192..1061860(+) (braR) [Streptococcus suis strain DAT300]
ATGATGAAAAAAGAGAAGATTTATATTGTTGAAGACGAAGAGATGATTGTCCAGCTCTTGAAGCAACACTTGGGAAAATC
GTATCAGGTGGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTTGCTGAAATCAAACCAGACTTGGTGCTGATGG
ACATTAGCCTGCCTTATTACAACGGTTTTTACTGGACGACAGAAATCCGTAAAACCATGACCATGCCCATTATCTTTATT
TCTTCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTGTCCAAGCCCTTTTCTCT
GGGAATTTTGGATGCCAAAATCGGAGCCTTCCTGCGTCGGGTCAATCAATTCAGCAAATCGAGCGAATTGTCTATCAATC
AGTTCCAGCTTAGTTTGGACGGGCGATTTTCAAACGAATCGGAGCAAGTTCAATTGTCTCCTACGGAAACCAAGATTTTG
TCCGCCTTGCTAGAAAGACAAGGGCAGATTGTCAGCAAGGAAGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTAT
CGACCAGAACACGCTCAATGTCAACATGACCAGACTGCGTAAGAAGGTGAGCGAGGTCGGTTTTGAACGTATTCATACCG
TTCGTGGCGTGGGGTACTTAGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-220)

Response regulator receiver domain (Response_reg)

(7-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.364

99.099

0.459

Multiple sequence alignment