Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6J63_RS02595 Genome accession   NZ_AP018765
Coordinates   503887..504540 (+) Length   217 a.a.
NCBI ID   WP_005692773.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-2 isolate 12H49     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 498887..509540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J63_RS02570 (CHBNII2_04940) - 499306..500310 (-) 1005 WP_105892747.1 ornithine carbamoyltransferase -
  K6J63_RS02575 (CHBNII2_04950) - 500713..501531 (+) 819 WP_105892746.1 Cof-type HAD-IIB family hydrolase -
  K6J63_RS02580 crcB 501531..501917 (+) 387 WP_105886704.1 fluoride efflux transporter CrcB -
  K6J63_RS02585 (CHBNII2_04970) recX 501914..502372 (-) 459 WP_011272121.1 recombination regulator RecX -
  K6J63_RS02590 (CHBNII2_04980) recA 502451..503515 (-) 1065 WP_005654959.1 recombinase RecA Machinery gene
  K6J63_RS02595 (CHBNII2_04990) sxy/tfoX 503887..504540 (+) 654 WP_005692773.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=70751 K6J63_RS02595 WP_005692773.1 503887..504540(+) (sxy/tfoX) [Haemophilus influenzae strain CHBN-II-2 isolate 12H49]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILERKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=70751 K6J63_RS02595 WP_005692773.1 503887..504540(+) (sxy/tfoX) [Haemophilus influenzae strain CHBN-II-2 isolate 12H49]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCTATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCGGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991

Multiple sequence alignment