Detailed information NTG0707500

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PIC95_RS05525
• Genome accession: NZ_CP116085
• Coordinates: 1149431..1150423 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain DETEC-S566
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1144431..1155423

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PIC95_RS05495 (PIC95_05495)	ispD	1144492..1145202 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PIC95_RS05500 (PIC95_05500)	ispF	1145202..1145681 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PIC95_RS05505 (PIC95_05505)	truD	1145678..1146727 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
PIC95_RS05510 (PIC95_05510)	surE	1146708..1147469 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PIC95_RS05515 (PIC95_05515)	pcm	1147463..1148089 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PIC95_RS05520 (PIC95_05520)	nlpD	1148274..1149368 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
PIC95_RS05525 (PIC95_05525)	rpoS	1149431..1150423 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PIC95_RS05530 (PIC95_05530)	-	1150594..1151145 (-)	552	WP_001179444.1	flavodoxin family protein	-
PIC95_RS05535 (PIC95_05535)	-	1151370..1152413 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
PIC95_RS05540 (PIC95_05540)	ygbN	1152556..1153920 (-)	1365	WP_000104433.1	GntP family transporter	-
PIC95_RS05545 (PIC95_05545)	ygbM	1154009..1154785 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=707500 PIC95_RS05525 WP_000081550.1 1149431..1150423(+) (rpoS) [Escherichia coli strain DETEC-S566]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=707500 PIC95_RS05525 WP_000081550.1 1149431..1150423(+) (rpoS) [Escherichia coli strain DETEC-S566]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715